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SCNpilot_cont_300_bf_scaffold_6021_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_6021_curated_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1274
DNA (1272bp) protein (424aa)
Serine-type D-Ala-D-Ala carboxypeptidase; K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ABD06055.1}; EC=3.4.16.4 {ECO:0000313|EMBL:ABD06055.1};; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000368CD6E
SCNpilot_cont_300_bf_scaffold_6021_curated_2
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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1213..2250
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003750603
cobalamin synthesis protein CobW
Cobw protein {ECO:0000313|EMBL:ADZ68548.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_6021_curated_3
unknown

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comp(2267..2392)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_6021_curated_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3123..4175)
DNA (1053bp) protein (351aa)
aconitate hydratase 1; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
aconitate hydratase n=1 Tax=Kaistia granuli RepID=UPI00036B9C78
SCNpilot_cont_300_bf_scaffold_6021_curated_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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4905..5825
DNA (921bp) protein (307aa)
Predicted protein n=1 Tax=Brucella suis bv. 3 str. 686 RepID=D0PN08_BRUSS
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
SCNpilot_cont_300_bf_scaffold_6021_curated_6
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6069..6677
DNA (609bp) protein (203aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
heme exporter protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035E6FA3
SCNpilot_cont_300_bf_scaffold_6021_curated_7
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6674..7339
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000374C28E
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
heme exporter protein CcmB; K02194 heme exporter protein B
SCNpilot_cont_300_bf_scaffold_6021_curated_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7518..11093)
DNA (3576bp) protein (1192aa)
putA; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (EC:1.5.99.8)
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A273_9PROT
Delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:EHL99769.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_300_bf_scaffold_6021_curated_9
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11441..12001
DNA (561bp) protein (187aa)
atpH; ATP synthase F0F1 subunit delta; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035F26EF
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_cont_300_bf_scaffold_6021_curated_10
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12001..12156
DNA (156bp) protein (52aa)
ATP synthase F1 subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
F0F1 ATP synthase subunit alpha n=1 Tax=Kaistia granuli RepID=UPI00036552DC
Displaying 10 items

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