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SCNpilot_cont_300_bf_scaffold_2391_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2391_curated_1
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..196)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000374E26F
hypothetical protein
UPF0262 protein Msil_3071 {ECO:0000256|HAMAP-Rule:MF_00678}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_2391_curated_2
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(298..1590)
DNA (1293bp) protein (431aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
histidinol dehydrogenase n=1 Tax=Kaistia granuli RepID=UPI00037464E5
hisD; histidinol dehydrogenase
SCNpilot_cont_300_bf_scaffold_2391_curated_3
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1665..2117)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037B4949
Uncharacterized protein {ECO:0000313|EMBL:EKF20608.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2391_curated_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2188..3477)
DNA (1290bp) protein (430aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA (EC:2.5.1.7); K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00111}; EC=2.5.1.7 {ECO:0000255|HAMAP-Rule:MF_00111};; Enoylpyruvate transferase {ECO:0000255|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000255|HAMAP-Rule:MF_00111}; Short=EPT {ECO:0000255|HAMAP-Rule:MF_00111};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Kaistia granuli RepID=UPI00035C8891
SCNpilot_cont_300_bf_scaffold_2391_curated_5
unknown

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comp(3606..3851)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2391_curated_6
Yersinia pestis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4174..4953)
DNA (780bp) protein (260aa)
3-oxoacyl-ACP reductase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FCC2
putative short chain oxidoreductase
Short chain dehydrogenase family protein {ECO:0000313|EMBL:AJJ80378.1}; TaxID=360102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pestis bv. Antiqua (strain Antiqua).;"
SCNpilot_cont_300_bf_scaffold_2391_curated_7
Erwinia typographi, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5624..6721
DNA (1098bp) protein (366aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
succinate-semialdehyde dehdyrogenase n=1 Tax=Pseudomonas tolaasii RepID=UPI0002E0F0AE
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGT95899.1}; TaxID=371042 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia typographi.;"
SCNpilot_cont_300_bf_scaffold_2391_curated_8
Yersinia pestis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6725..8227
DNA (1503bp) protein (501aa)
xylulokinase; K00854 xylulokinase [EC:2.7.1.17]
carbohydrate kinase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FCBE
Putative carbohydrate kinase {ECO:0000313|EMBL:CAL19945.1}; Putative xylulose kinase {ECO:0000313|EMBL:AAM86444.1}; TaxID=632 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pestis.;"
SCNpilot_cont_300_bf_scaffold_2391_curated_9
Yersinia pseudotuberculosis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8220..8963
DNA (744bp) protein (248aa)
Phosphoglycolate phosphatase {ECO:0000313|EMBL:CRG48806.1}; EC=3.1.3.18 {ECO:0000313|EMBL:CRG48806.1};; TaxID=633 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pseudotuberculosis.;"
putative Phosphoglycolate phosphatase (EC:3.1.3.18)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037C4905
SCNpilot_cont_300_bf_scaffold_2391_curated_10
Acinetobacter bereziniae, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8978..9817
DNA (840bp) protein (280aa)
transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FCBC
Phosphogluconate repressor HexR, RpiR family {ECO:0000313|EMBL:CEI51575.1}; TaxID=106648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter bereziniae (Acinetobacter genomosp. 10).;"
putative Phosphogluconate repressor HexR, RpiR family
SCNpilot_cont_300_bf_scaffold_2391_curated_11
Erwinia typographi, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9871..10575
DNA (705bp) protein (235aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=371042 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia typographi.;"
rpiA1; ribose 5-phosphate isomerase A (EC:5.3.1.6); K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6]
ribose 5-phosphate isomerase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FCBB
SCNpilot_cont_300_bf_scaffold_2391_curated_12
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10785..11867
DNA (1083bp) protein (361aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Kaistia granuli RepID=UPI00037B0A1C
putative ABC-type sugar transport system, periplasmic component
Putative ABC-type sugar transport system,periplasmic component {ECO:0000313|EMBL:CCN42175.1}; TaxID=1238441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo FTn2.;"
SCNpilot_cont_300_bf_scaffold_2391_curated_13
Erwinia typographi, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12056..13567
DNA (1512bp) protein (504aa)
ABC sugar transporter, fused ATP-binding subunits; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
ribose ABC transporter ATP-binding protein n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FCB9
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGT95905.1}; TaxID=371042 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia typographi.;"
SCNpilot_cont_300_bf_scaffold_2391_curated_14
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13600..14601
DNA (1002bp) protein (334aa)
sugar ABC transporter permease n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FCB8
putative ABC-type transport system, permease component
Putative ABC-type transport system, permease component {ECO:0000313|EMBL:CCO57624.1}; TaxID=28173 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo.;"
SCNpilot_cont_300_bf_scaffold_2391_curated_15
unknown

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comp(14634..14900)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2391_curated_16
unknown

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comp(14942..15094)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2391_curated_17
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15091..15690)
DNA (600bp) protein (200aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003822E70
dihydrodipicolinate synthase
SCNpilot_cont_300_bf_scaffold_2391_curated_18
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16044..16490)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000349B76E
hypothetical protein
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ46602.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_cont_300_bf_scaffold_2391_curated_19
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16435..16878)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LVT6_METRJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB25586.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_cont_300_bf_scaffold_2391_curated_20
unknown

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17242..17991
DNA (750bp) protein (250aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2391_curated_21
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18118..18681
DNA (564bp) protein (188aa)
rfbC; dTDP-4,deoxyrhamnose 3,5 epimerase (EC:5.1.3.13)
dTDP-4,deoxyrhamnose 3,5 epimerase {ECO:0000313|EMBL:CDI11480.1}; EC=5.1.3.13 {ECO:0000313|EMBL:CDI11480.1};; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000370CA2F
SCNpilot_cont_300_bf_scaffold_2391_curated_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18692..19084
DNA (393bp) protein (131aa)
rffB; dTDP-D-glucose-4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase n=1 Tax=Rhizobium radiobacter RepID=Q9EYR8_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KAJ35704.1}; Flags: Fragment;; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Displaying 22 items

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