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SCNpilot_cont_300_bf_scaffold_1274_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1274_curated_1
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(526..726)
DNA (201bp) protein (67aa)
exonuclease VII large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2WAV9_MAGSA
SCNpilot_cont_300_bf_scaffold_1274_curated_2
RBG_13_Euryarchaeota_61_15_curated, Euryarchaeota, Archaea

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comp(775..1062)
DNA (288bp) protein (96aa)
Tax=RBG_13_Euryarchaeota_61_15_curated
SCNpilot_cont_300_bf_scaffold_1274_curated_3
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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1934..3790
DNA (1857bp) protein (619aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000362A535
mutL; DNA mismatch repair protein mutL; K03572 DNA mismatch repair protein MutL
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_1274_curated_4
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3831..4058
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037D8065
Uncharacterized protein {ECO:0000313|EMBL:EKF17626.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1274_curated_5
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4065..5105)
DNA (1041bp) protein (347aa)
tetraacyldisaccharide 4'-kinase; K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000382C0CE
SCNpilot_cont_300_bf_scaffold_1274_curated_6
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5102..6406)
DNA (1305bp) protein (435aa)
3-deoxy-D-manno-octulosonic-acid transferase; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EEAE5
3-deoxy-D-manno-octulosonic acid transferase {ECO:0000313|EMBL:KFG67240.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_cont_300_bf_scaffold_1274_curated_7
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6399..7157)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361826B
hypothetical protein; K09778 hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ADZ71832.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_1274_curated_8
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7204..7443)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037449CB
Inositol monophosphatase {ECO:0000313|EMBL:KJS16974.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1274_curated_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7456..8316)
DNA (861bp) protein (287aa)
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003807B89
Inositol monophosphatase {ECO:0000313|EMBL:EKF41217.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_cont_300_bf_scaffold_1274_curated_10
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8303..9640)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036F5411
Modulator protein {ECO:0000313|EMBL:ERP88637.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
pmbA; Zn-dependent protease; K03592 PmbA protein
SCNpilot_cont_300_bf_scaffold_1274_curated_11
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9863..11674
DNA (1812bp) protein (604aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000372E0DB
membrane component of K+ transport systems, Kef type; K11747 glutathione-regulated potassium-efflux system protein KefB
Candidate membrane component of K+ transport systems, Kef type {ECO:0000313|EMBL:AEG91918.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_cont_300_bf_scaffold_1274_curated_12
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11691..13028)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037B8E77
Putative Zn-dependent protease {ECO:0000313|EMBL:CCD85071.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
Zn-dependent protease
SCNpilot_cont_300_bf_scaffold_1274_curated_13
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13053..14393)
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003629C37
Zinc protease {ECO:0000313|EMBL:KHJ55716.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
peptidase M16 domain-containing protein
SCNpilot_cont_300_bf_scaffold_1274_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14533..15087)
DNA (555bp) protein (185aa)
rsmD; ribosomal RNA small subunit methyltransferase D (EC:2.1.1.171)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363F42C
Putative methylase protein {ECO:0000313|EMBL:ACP24215.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_cont_300_bf_scaffold_1274_curated_15
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15068..16183)
DNA (1116bp) protein (372aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
rluB; ribosomal large subunit pseudouridine synthase B; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] rbh
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000376C523
SCNpilot_cont_300_bf_scaffold_1274_curated_16
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16382..16834
DNA (453bp) protein (151aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036DD6B2
cytidine and deoxycytidylate deaminase zinc-binding domain-containing protein
SCNpilot_cont_300_bf_scaffold_1274_curated_17
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18455..19210
DNA (756bp) protein (252aa)
DeoR faimly transcriptional regulator n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI0003488497
DeoR family transcriptional regulator {ECO:0000313|EMBL:EIN01856.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
deoR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1274_curated_18
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19273..19935)
DNA (663bp) protein (221aa)
molecular chaperone GroEL n=1 Tax=Kaistia granuli RepID=UPI00035E9E54
chaperonin GroEL; K04077 chaperonin GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Displaying 18 items

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