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SCNpilot_cont_300_bf_scaffold_5263_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_5263_curated_1
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..538)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003642FE6
MiaB family protein, possibly involved in tRNA or rRNA modification {ECO:0000313|EMBL:CDP53831.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
MiaB-like tRNA modifying protein
SCNpilot_cont_300_bf_scaffold_5263_curated_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(577..1437)
DNA (861bp) protein (287aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000381AB99
SCNpilot_cont_300_bf_scaffold_5263_curated_3
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1662..2978
DNA (1317bp) protein (439aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
nicotinate phosphoribosyltransferase (NAPRTase) (EC:2.4.2.11); K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000373F74A
SCNpilot_cont_300_bf_scaffold_5263_curated_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2984..4252)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037161AD
Periplasmic beta-glucosidase {ECO:0000313|EMBL:KGM31940.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5263_curated_5
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4249..5421)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003737F70
ABC transporter domain-containing protein; K02471 putative ATP-binding cassette transporter
ABC transporter domain protein {ECO:0000313|EMBL:ACK49381.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_5263_curated_6
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6152..7639
DNA (1488bp) protein (496aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
glycerol kinase (EC:2.7.1.30); K00864 glycerol kinase [EC:2.7.1.30]
glycerol kinase n=1 Tax=Kaistia granuli RepID=UPI00037920A7
SCNpilot_cont_300_bf_scaffold_5263_curated_7
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7752..8498
DNA (747bp) protein (249aa)
Probable acetoacetate decarboxylase {ECO:0000256|HAMAP-Rule:MF_00597}; Short=AAD {ECO:0000256|HAMAP-Rule:MF_00597};; Short=ADC {ECO:0000256|HAMAP-Rule:MF_00597};; EC=4.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00597};; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
UPI0003CF1DB9 related cluster n=1 Tax=unknown RepID=UPI0003CF1DB9
acetoacetate decarboxylase
SCNpilot_cont_300_bf_scaffold_5263_curated_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8513..9667
DNA (1155bp) protein (385aa)
Phospholipase, patatin family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LYT9_RHITR
phospholipase, patatin family
Phospholipase, patatin family {ECO:0000313|EMBL:AGB75309.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_5263_curated_9
unknown

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9747..10094
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003612680
SCNpilot_cont_300_bf_scaffold_5263_curated_10
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10173..12563
DNA (2391bp) protein (797aa)
carbohydrate-binding family V/XII n=1 Tax=Xanthobacteraceae RepID=UPI00036D2B92
carbohydrate-binding family V/XII protein
Carbohydrate-binding family V/XII protein {ECO:0000313|EMBL:ADH90349.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_5263_curated_11

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comp(12570..13046)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003790CEA
Uncharacterized protein {ECO:0000313|EMBL:KKN79374.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Crp/Fnr family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_5263_curated_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13064..13747)
DNA (684bp) protein (228aa)
transcriptional regulator n=1 Tax=Kaistia granuli RepID=UPI0003750B20
transcription regulator protein rbh
Transcriptional regulator {ECO:0000313|EMBL:KDP71461.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Displaying 12 items

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