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SCNpilot_cont_300_bf_scaffold_1404_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1404_curated_1
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..579)
DNA (579bp) protein (193aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
ruvB; Holliday junction DNA helicase subunit RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction DNA helicase RuvB n=1 Tax=Kaistia granuli RepID=UPI00037F72E2
SCNpilot_cont_300_bf_scaffold_1404_curated_2
unknown

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comp(576..1214)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003714086
SCNpilot_cont_300_bf_scaffold_1404_curated_3
unknown

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comp(1211..1675)
DNA (465bp) protein (155aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1404_curated_4
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1672..2289)
DNA (618bp) protein (206aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
Holliday junction DNA helicase RuvA n=1 Tax=Kaistia granuli RepID=UPI000368DB7B
ruvA; Holliday junction DNA helicase RuvA
SCNpilot_cont_300_bf_scaffold_1404_curated_5
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2430..2942)
DNA (513bp) protein (171aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 2068
ruvC; Crossover junction endodeoxyribonuclease ruvC; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000369BDAF
SCNpilot_cont_300_bf_scaffold_1404_curated_6
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3070..3666)
DNA (597bp) protein (199aa)
Tat pathway signal sequence n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RVM4_9RALS
Membrane protein {ECO:0000313|EMBL:KHK49562.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1404_curated_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3738..4487)
DNA (750bp) protein (250aa)
transcriptional regulator n=1 Tax=Kaistia granuli RepID=UPI00037D02A2
Probable transcriptional regulatory protein IE4771_CH03765 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1404_curated_8
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4604..5782)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000365B5C8
putative Sel1 domain protein repeat-containing protein; K07126
Putative Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:CCE97328.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_cont_300_bf_scaffold_1404_curated_9
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5779..6450)
DNA (672bp) protein (224aa)
thiE; thiamine-phosphate pyrophosphorylase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
Thiamine-phosphate pyrophosphorylase {ECO:0000313|EMBL:AEV39201.1}; EC=2.5.1.3 {ECO:0000313|EMBL:AEV39201.1};; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037D8207
SCNpilot_cont_300_bf_scaffold_1404_curated_10
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6520..7308)
DNA (789bp) protein (263aa)
inositol monophosphatase family protein; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Extragenic suppressor protein SuhB n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLI6_9RHIZ
Extragenic suppressor protein SuhB {ECO:0000313|EMBL:EHK58384.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_cont_300_bf_scaffold_1404_curated_11
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7419..8240)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003642E93
phosphatase; K09769 hypothetical protein
Putative phosphatase protein {ECO:0000313|EMBL:ADZ69342.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_1404_curated_12
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8255..8833)
DNA (579bp) protein (193aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
5,10-methenyltetrahydrofolate synthetase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000376BCFC
SCNpilot_cont_300_bf_scaffold_1404_curated_13
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9067..9432)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361FC73
hypothetical protein; K09888 cell division protein ZapA
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_1404_curated_14
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9439..9723)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M9D7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF18736.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1404_curated_15
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10014..12005
DNA (1992bp) protein (664aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
transketolase (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1] rbh
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037CE0D6
SCNpilot_cont_300_bf_scaffold_1404_curated_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12100..13062
DNA (963bp) protein (321aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
glyceraldehyde-3-phosphate dehydrogenase; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Kaistia granuli RepID=UPI00035FE377
Displaying 16 items

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