ggKbase home page

SCNpilot_cont_300_bf_scaffold_2142_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2142_curated_1
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1421
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida S610 RepID=V6J4K2_PSEPU
Uncharacterized protein {ECO:0000313|EMBL:EST14852.1}; TaxID=1399145 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S610.;"
glutamate synthase (NADPH)
SCNpilot_cont_300_bf_scaffold_2142_curated_2
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1490..2659)
DNA (1170bp) protein (390aa)
cystathionine beta-lyase n=1 Tax=Kaistia granuli RepID=UPI000360143E
Cys/Met metabolism pyridoxal-phosphate-dependent protein {ECO:0000313|EMBL:EHH07196.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
Cys/Met metabolism pyridoxal-phosphate-dependent protein
SCNpilot_cont_300_bf_scaffold_2142_curated_3
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2656..4059)
DNA (1404bp) protein (468aa)
Pyridoxal-5'-phosphate-dependent protein beta subunit; K01697 cystathionine beta-synthase [EC:4.2.1.22]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003826C52
Cystathionine beta-synthase {ECO:0000313|EMBL:CDX35562.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
SCNpilot_cont_300_bf_scaffold_2142_curated_4
unknown

Not on your lists

comp(4204..4428)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003743C79
SCNpilot_cont_300_bf_scaffold_2142_curated_5
unknown

Not on your lists

4633..4827
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A5730
SCNpilot_cont_300_bf_scaffold_2142_curated_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4907..5266
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036F00CB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63767.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2142_curated_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5292..6356)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003779C79
Alanine racemase {ECO:0000313|EMBL:KFL25678.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative amino acid aldolase or racemase
SCNpilot_cont_300_bf_scaffold_2142_curated_8
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6379..7257)
DNA (879bp) protein (293aa)
RpiR family transcriptional regulator protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KAP2_9RHIZ
RpiR family transcriptional regulator protein {ECO:0000313|EMBL:EMG52260.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
RpiR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2142_curated_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7266..8027)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037D0BD0
Catenin {ECO:0000313|EMBL:KKB13775.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_2142_curated_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8163..8531
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375A2E3
Uncharacterized protein {ECO:0000313|EMBL:KFL25680.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
endoribonuclease L-PSP
SCNpilot_cont_300_bf_scaffold_2142_curated_11
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8541..9977
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NB28_RHISP
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
microcystin LR degradation protein MlrC-like protein
SCNpilot_cont_300_bf_scaffold_2142_curated_12
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9994..11244)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Paenibacillus sp. OSY-SE RepID=UPI0003184336
Uncharacterized protein {ECO:0000313|EMBL:CDN62276.1}; TaxID=1055524 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia H111.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2142_curated_13
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11392..12837
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000378FB44
Major facilitator transporter {ECO:0000313|EMBL:KGM34459.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
major facilitator transporter
SCNpilot_cont_300_bf_scaffold_2142_curated_14
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12894..14147
DNA (1254bp) protein (418aa)
peptidase M29 aminopeptidase II; K01269 aminopeptidase [EC:3.4.11.-]
peptidase M29 n=1 Tax=Kaistia granuli RepID=UPI00037D95E6
Peptidase M29 aminopeptidase II {ECO:0000313|EMBL:ADH88925.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_2142_curated_15
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14764..16947
DNA (2184bp) protein (728aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000365B898
Uncharacterized protein {ECO:0000313|EMBL:ABC23677.1}; Flags: Precursor;; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_cont_300_bf_scaffold_2142_curated_16
unknown

Not on your lists

17109..17273
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361B18E
Displaying 16 items

View Taxonomy