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SCNpilot_cont_300_bf_scaffold_2072_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2072_curated_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2168..2869)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036FC2AB
radC; DNA repair protein RadC; K03630 DNA repair protein RadC
DNA repair protein RadC {ECO:0000313|EMBL:ABE61321.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_2072_curated_2
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2866..3699)
DNA (834bp) protein (278aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
methionine aminopeptidase n=1 Tax=Kaistia granuli RepID=UPI00037800DF
SCNpilot_cont_300_bf_scaffold_2072_curated_3
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3910..4665
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380DF76
CinA-like protein
CinA-like protein {ECO:0000313|EMBL:ADZ70051.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_2072_curated_4
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4662..5438)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00035CD420
Uncharacterized protein {ECO:0000313|EMBL:AID30954.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2072_curated_5
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5608..6105
DNA (498bp) protein (166aa)
phosphoribosyl transferase domain-containing protein; K00769 xanthine phosphoribosyltransferase [EC:2.4.2.22]
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01903, ECO:0000256|SAAS:SAAS00010603}; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01903, ECO:0000256|SAAS:SAAS00010679};; Xanthine-guanine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01903}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
xanthine phosphoribosyltransferase n=1 Tax=Kaistia granuli RepID=UPI000368B80E
SCNpilot_cont_300_bf_scaffold_2072_curated_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6116..6445
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037AED82
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH89378.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_2072_curated_7
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6515..7414)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003639D57
Multidrug DMT transporter permease {ECO:0000313|EMBL:KGE01832.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2072_curated_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7548..8408
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037364D5
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABS67290.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_300_bf_scaffold_2072_curated_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8416..9144)
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037992DD
Uncharacterized protein {ECO:0000313|EMBL:KKB84993.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hemin transport protein HmuS
SCNpilot_cont_300_bf_scaffold_2072_curated_10
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9644..10237
DNA (594bp) protein (198aa)
TetR family transcriptional regulator n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00037E251B
TetR family transcriptional regulator {ECO:0000313|EMBL:KJK21139.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2072_curated_11
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10430..11245
DNA (816bp) protein (272aa)
AraC family transcriptional regulator n=1 Tax=Rhizobium mongolense RepID=UPI0003B4AA04
short-chain dehydrogenase/reductase SDR; K07124
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADG17220.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCNpilot_cont_300_bf_scaffold_2072_curated_12
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11357..12061)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B2026
Uncharacterized protein {ECO:0000313|EMBL:KFL24862.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2072_curated_13
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12256..13200
DNA (945bp) protein (315aa)
aas; long-chain-fatty-acid--[acyl-carrier-protein] ligase (EC:6.2.1.20); K05939 acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375B572
2-acyl-glycerophospho-ethanolamine acyltransferase {ECO:0000313|EMBL:AJR23684.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_cont_300_bf_scaffold_2072_curated_14
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13185..13682
DNA (498bp) protein (166aa)
acylglycerophosphoethanolamine acyltransferase; K05939 acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375B572
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACL59380.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_300_bf_scaffold_2072_curated_15
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13707..14921)
DNA (1215bp) protein (405aa)
Diguanylate phosphodiesterase (EAL domain) with GAF sensor n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20YT7_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:KCZ63600.1}; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas atlantica.;"
diguanylate phosphodiesterase
SCNpilot_cont_300_bf_scaffold_2072_curated_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15108..16280)
DNA (1173bp) protein (391aa)
amine oxidase; K00480 salicylate hydroxylase [EC:1.14.13.1]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035F3C9F
Amine oxidase {ECO:0000313|EMBL:ADU43554.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_300_bf_scaffold_2072_curated_17
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16299..16547)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003638826
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG62514.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_300_bf_scaffold_2072_curated_18
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16694..17452
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035F87D1
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EFO30619.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
hydrolase
SCNpilot_cont_300_bf_scaffold_2072_curated_19
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17646..18470
DNA (825bp) protein (275aa)
serine O-acetyltransferase (EC:2.3.1.30); K00640 serine O-acetyltransferase [EC:2.3.1.30]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003614884
Serine O-acetyltransferase {ECO:0000313|EMBL:EJN04845.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
SCNpilot_cont_300_bf_scaffold_2072_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18570..18785
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035E6129
Uncharacterized protein {ECO:0000313|EMBL:EYR79971.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2072_curated_21
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18991..19305
DNA (315bp) protein (105aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7G9S0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERP94252.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2072_curated_22
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19316..19510
DNA (195bp) protein (65aa)
Acetyltransferase protein {ECO:0000313|EMBL:CDM57815.1}; EC=2.3.1.- {ECO:0000313|EMBL:CDM57815.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035E78EF
acetyltransferase
Displaying 22 items

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