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SCNpilot_cont_300_bf_scaffold_1955_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1955_curated_1
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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542..727
DNA (186bp) protein (62aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Sensor protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I181_AZOC5
sensor protein
SCNpilot_cont_300_bf_scaffold_1955_curated_2
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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982..1548
DNA (567bp) protein (189aa)
oxidoreductase n=2 Tax=Xanthobacteraceae RepID=UPI000370159B
Uncharacterized protein {ECO:0000313|EMBL:EJL50508.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_1955_curated_3
unknown

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comp(1641..1955)
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1955_curated_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2490..2819
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003662A4A
hypothetical protein
FAD-dependent monooxygenase {ECO:0000313|EMBL:BAF87341.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_1955_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3023..4003
DNA (981bp) protein (327aa)
Sugar ABC transporter, permease protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D571_9RHIZ
Sugar ABC transporter, permease protein {ECO:0000313|EMBL:EYR84481.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter, permease protein; K02057 simple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_1955_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4084..5151
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG74_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR84484.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein
SCNpilot_cont_300_bf_scaffold_1955_curated_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5203..6750
DNA (1548bp) protein (516aa)
Ribose ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIC29641.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AIC29641.1};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
Sugar transport ATP-binding protein n=1 Tax=Sinorhizobium fredii GR64 RepID=F7XYU9_RHIFR
teuA; sugar ABC transporter, ATP-binding protein TeuA
SCNpilot_cont_300_bf_scaffold_1955_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6747..7688
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000372F6BF
Sugar transport system permease protein {ECO:0000313|EMBL:EYR84482.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inner-membrane translocator
SCNpilot_cont_300_bf_scaffold_1955_curated_9
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7727..8599
DNA (873bp) protein (291aa)
SMP-30/Gluconolaconase/LRE domain protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ES90_9RHIZ
SMP-30/Gluconolaconase/LRE domain protein {ECO:0000313|EMBL:CCV07167.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
SMP-30/Gluconolaconase/LRE domain-containing protein
SCNpilot_cont_300_bf_scaffold_1955_curated_10
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8678..9385
DNA (708bp) protein (236aa)
Transcriptional regulator, GntR family n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q510_9RHIZ
Transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDI12318.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_cont_300_bf_scaffold_1955_curated_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9404..10093)
DNA (690bp) protein (230aa)
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 2 {ECO:0000313|EMBL:CDN95207.1}; EC=1.1.1.127 {ECO:0000313|EMBL:CDN95207.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Rhizobium meliloti RepID=UPI0003658C02
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_1955_curated_12
Pseudomonas monteilii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10201..11184)
DNA (984bp) protein (328aa)
transketolase central region; K00615 transketolase [EC:2.2.1.1]
Transketolase central region n=3 Tax=Pseudomonas RepID=F8G2X6_PSEPU
Transketolase {ECO:0000313|EMBL:AHC87573.1}; TaxID=1435058 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas monteilii SB3101.;"
SCNpilot_cont_300_bf_scaffold_1955_curated_13
Pseudomonas sp. GM60, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11181..12071)
DNA (891bp) protein (297aa)
transketolase domain-containing protein; K00615 transketolase [EC:2.2.1.1]
Transketolase, beta subunit n=1 Tax=Pseudomonas sp. GM60 RepID=J3B2P7_9PSED
Transketolase, beta subunit {ECO:0000313|EMBL:EJM76698.1}; TaxID=1144334 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM60.;"
SCNpilot_cont_300_bf_scaffold_1955_curated_14
Pseudomonas sp. FGI182, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12106..13209)
DNA (1104bp) protein (368aa)
iron-containing alcohol dehydrogenase; K00005 glycerol dehydrogenase [EC:1.1.1.6]
Iron-containing alcohol dehydrogenase n=1 Tax=Pseudomonas putida S16 RepID=F8G3U0_PSEPU
Alcohol dehydrogenase {ECO:0000313|EMBL:AHD15057.1}; TaxID=1259844 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FGI182.;"
Displaying 14 items

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