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SCNpilot_cont_300_bf_scaffold_1263_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1263_curated_1
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..204)
DNA (204bp) protein (68aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Elongation factor 4 n=2 Tax=Bradyrhizobium RepID=A4YL82_BRASO
lepA; GTP-binding protein LepA; K03596 GTP-binding protein LepA
SCNpilot_cont_300_bf_scaffold_1263_curated_2
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(246..1154)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003764F2F
Regulatory protein CysB {ECO:0000313|EMBL:CDP51731.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1263_curated_3
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1275..1826
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035D6B76
hpa2; histone acetyltransferase
Histone acetyltransferase {ECO:0000313|EMBL:BAF89531.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_1263_curated_4
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1828..2319
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036D70D0
yncA; N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AFK57298.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_300_bf_scaffold_1263_curated_5
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2395..3036
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003696E19
lysine exporter protein LysE/YggA
Amino acid efflux protein {ECO:0000313|EMBL:ESR26907.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
SCNpilot_cont_300_bf_scaffold_1263_curated_6
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3086..3757)
DNA (672bp) protein (224aa)
Transcriptional regulator, TetR family n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q090Y7_STIAD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EAU66287.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCNpilot_cont_300_bf_scaffold_1263_curated_7
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3841..4968
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HGB0020 RepID=S2ZIH4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD63714.1}; TaxID=1078086 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
monooxygenase
SCNpilot_cont_300_bf_scaffold_1263_curated_8
unknown

Not on your lists

comp(4965..5384)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035C854F
SCNpilot_cont_300_bf_scaffold_1263_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5393..6604)
DNA (1212bp) protein (404aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1
50S rRNA methyltransferase n=1 Tax=Kaistia granuli RepID=UPI0003672E15
putative pyruvate formate lyase activating enzyme 2 (yfgB)
SCNpilot_cont_300_bf_scaffold_1263_curated_10
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6864..7133
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RL04_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR26746.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
prevent-host-death family protein
SCNpilot_cont_300_bf_scaffold_1263_curated_11
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7422..9236)
DNA (1815bp) protein (605aa)
poly-beta-hydroxybutyrate polymerase domain-containing protein; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Poly-beta-hydroxybutyrate polymerase domain protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BCB9_PARDP
Poly-beta-hydroxybutyrate polymerase {ECO:0000313|EMBL:KGJ09086.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
SCNpilot_cont_300_bf_scaffold_1263_curated_12
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9326..10276)
DNA (951bp) protein (317aa)
modification methylase,hemK family; K07320 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72]
50S ribosomal protein L3 glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02125}; Short=L3 MTase {ECO:0000256|HAMAP-Rule:MF_02125};; EC=2.1.1.298 {ECO:0000256|HAMAP-Rule:MF_02125};; N5-glutamine methyltransferase PrmB {ECO:0000256|HAMAP-Rule:MF_02125}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037BD058
SCNpilot_cont_300_bf_scaffold_1263_curated_13
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10385..11167)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037FCEA8
Protein of unassigned function {ECO:0000313|EMBL:AIQ88397.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1263_curated_14
unknown

Not on your lists

11169..11465
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1263_curated_15
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11318..11719)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036389C3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB64654.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_300_bf_scaffold_1263_curated_16
unknown

Not on your lists

comp(11807..12157)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1263_curated_17
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12307..13398
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000300F9A6
Ammonia monooxygenase {ECO:0000313|EMBL:KGM33849.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ammonia monooxygenase; K07120
SCNpilot_cont_300_bf_scaffold_1263_curated_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13493..14302
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPV1_NITHX
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_cont_300_bf_scaffold_1263_curated_19
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14299..14601
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IJV1_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB96326.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_1263_curated_20
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15596..16273)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003786E65
Uncharacterized protein {ECO:0000313|EMBL:KGM34957.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1263_curated_21
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16294..17043)
DNA (750bp) protein (250aa)
Transcriptional regulator, GntR family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11F72_MESSB
Transcriptional regulator, GntR family {ECO:0000313|EMBL:KFC67674.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1263_curated_22
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17153..18295)
DNA (1143bp) protein (381aa)
oxidoreductase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003637C1C
Oxidoreductase {ECO:0000313|EMBL:KFG69876.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
putative dehydrogenase
SCNpilot_cont_300_bf_scaffold_1263_curated_23
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18319..18948)
DNA (630bp) protein (210aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036F8CCC
putative ATP-binding component of ABC transporter; K02023 multiple sugar transport system ATP-binding protein
Putative ATP-binding component of ABC transporter {ECO:0000313|EMBL:EJZ20072.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_cont_300_bf_scaffold_1263_curated_24
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19324..20211)
DNA (888bp) protein (296aa)
Putative permease component of ABC transporter n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M764_RHIL3
Sugar ABC transporter permease protein {ECO:0000313|EMBL:AIC31887.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
putative permease component of ABC transporter; K02026 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_1263_curated_25
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20211..21179)
DNA (969bp) protein (323aa)
Permease component of ABC-type sugar transporter n=1 Tax=Rhizobium sp. CF142 RepID=J1TDZ6_9RHIZ
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:EJJ30051.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
sugar ABC transporter, permease protein; K02025 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_1263_curated_26
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21184..22416)
DNA (1233bp) protein (411aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J2B2C9_9RHIZ
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EJJ30050.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
putative amino acid ABC transporter, substrate-binding protein
SCNpilot_cont_300_bf_scaffold_1263_curated_27
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22497..22898)
DNA (402bp) protein (134aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VFA3_9RHIZ
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ENN89792.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
xylose isomerase domain-containing protein
SCNpilot_cont_300_bf_scaffold_1263_curated_28
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23667..24737
DNA (1071bp) protein (357aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2WE60_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJK81103.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
transcriptional regulator protein
SCNpilot_cont_300_bf_scaffold_1263_curated_29
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24724..25536)
DNA (813bp) protein (271aa)
hydrolase n=1 Tax=Streptomyces RepID=UPI000366F9DC
Uncharacterized protein {ECO:0000313|EMBL:EWY37201.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_1263_curated_30
Mycobacterium vaccae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25713..26789
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00037673F2
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:EJZ08983.1}; TaxID=1194972 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vaccae ATCC 25954.;"
twin-arginine translocation pathway signal protein
Displaying items 1-30 of 37 in total

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