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SCNpilot_cont_300_bf_scaffold_2403_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2403_curated_1
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..435
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003714E0C
Hydroxymethylpyrimidine ABC transporter, substrate-binding component {ECO:0000313|EMBL:ESR27056.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
ABC transporter periplasmic; K15598 putative hydroxymethylpyrimidine transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_2403_curated_2

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comp(442..2253)
DNA (1812bp) protein (604aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000367CF13
Uncharacterized protein {ECO:0000313|EMBL:KKN89011.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
adenylate cyclase rbh
SCNpilot_cont_300_bf_scaffold_2403_curated_3
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2377..3288)
DNA (912bp) protein (304aa)
RNA polymerase sigma 70 n=1 Tax=Kaistia granuli RepID=UPI000378EA7A
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
RNA polymerase sigma factor; K03089 RNA polymerase sigma-32 factor
SCNpilot_cont_300_bf_scaffold_2403_curated_4
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3420..4430)
DNA (1011bp) protein (337aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
RNA-pseudouridylate synthase, ribosomal large subunit D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003641697
SCNpilot_cont_300_bf_scaffold_2403_curated_5

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4459..4830
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036ADBD4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKN85613.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_300_bf_scaffold_2403_curated_6
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5489..5935)
DNA (447bp) protein (149aa)
UPI0003CFF700 related cluster n=1 Tax=unknown RepID=UPI0003CFF700
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:ESZ10376.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
BadM/Rrf2 family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2403_curated_7
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6107..6673)
DNA (567bp) protein (189aa)
Conserved protein of DIM6/NTAB family n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HTB3_9RHIZ
Conserved protein of DIM6/NTAB family {ECO:0000313|EMBL:EJN04933.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
putative flavin reductase
SCNpilot_cont_300_bf_scaffold_2403_curated_8
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7053..7619
DNA (567bp) protein (189aa)
Isochorismatase hydrolase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I8S9_AZOC5
Isochorismatase hydrolase {ECO:0000313|EMBL:CDN55202.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
isochorismatase hydrolase
SCNpilot_cont_300_bf_scaffold_2403_curated_9
unknown

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comp(7451..8176)
DNA (726bp) protein (242aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2403_curated_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8346..8588
DNA (243bp) protein (81aa)
AraC family transcriptional regulator n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D68683
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:EJJ31310.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2403_curated_11
Gordonia alkanivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(8585..9937)
DNA (1353bp) protein (451aa)
Putative FMNH2-dependent monooxygenase n=1 Tax=Gordonia alkanivorans NBRC 16433 RepID=F9VYU8_9ACTO
Putative FMNH2-dependent monooxygenase {ECO:0000313|EMBL:GAA13787.1}; TaxID=1027371 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia alkanivorans NBRC 16433.;"
dibenzothiophene desulfurziation enzyme
SCNpilot_cont_300_bf_scaffold_2403_curated_12
Streptomyces sp. WM6386, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(9947..10708)
DNA (762bp) protein (254aa)
Aliphatic sulfonates import ATP-binding protein SsuB {ECO:0000256|HAMAP-Rule:MF_01724}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01724};; TaxID=1415558 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. WM6386.;"
aliphatic sulfonate ABC transporter ATP-binding protein n=1 Tax=Streptomyces prunicolor RepID=UPI00037D57EB
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_2403_curated_13
Bifidobacterium psychraerophilum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(10720..11676)
DNA (957bp) protein (319aa)
Extracellular solute-binding protein n=1 Tax=Bifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM 20104 / JCM 1190 / R101-8) RepID=I1WAD1_BIFAR
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:KFI81328.1}; TaxID=218140 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium psychraerophilum.;"
extracellular solute-binding protein; K15553 sulfonate transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_2403_curated_14
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

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comp(11714..12550)
DNA (837bp) protein (279aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6WGE0_KINRD
ABC transporter inner membrane protein; K15554 sulfonate transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABS05879.1}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
SCNpilot_cont_300_bf_scaffold_2403_curated_15
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12562..13344)
DNA (783bp) protein (261aa)
hydroxyethylthiazole kinase family superfamily; K00878 hydroxyethylthiazole kinase [EC:2.7.1.50]
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
hypothetical protein n=1 Tax=Streptomyces prunicolor RepID=UPI0003813022
SCNpilot_cont_300_bf_scaffold_2403_curated_16
Rhodococcus sp. AD45, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(13569..14444)
DNA (876bp) protein (292aa)
3-mercaptopyruvate sulfurtransferase {ECO:0000313|EMBL:KJF22889.1}; EC=2.8.1.2 {ECO:0000313|EMBL:KJF22889.1};; TaxID=103808 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AD45.;"
3-mercaptopyruvate sulfurtransferase (EC:2.8.1.2); K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
thiosulfate sulfurtransferase n=1 Tax=Glaciibacter superstes RepID=UPI0003B68D53
SCNpilot_cont_300_bf_scaffold_2403_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14464..14754)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2G1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78591.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying 17 items

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