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SCNpilot_cont_300_bf_scaffold_5119_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_5119_curated_1
Oryza sativa, Oryza, Poales, commelinids, Streptophyta, Viridiplantae

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2..652
DNA (651bp) protein (217aa)
Plus agglutinin n=2 Tax=Chlamydomonas reinhardtii RepID=Q6SSE6_CHLRE
Os11g0657400; Similar to Extensin-like protein.
Putative uncharacterized protein {ECO:0000313|EMBL:EEE52502.1}; TaxID=39947 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza.;" source="Oryza sativa subsp. japonica (Rice).;"
SCNpilot_cont_300_bf_scaffold_5119_curated_2
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(862..1956)
DNA (1095bp) protein (365aa)
GTP-binding protein YchF n=1 Tax=Kaistia granuli RepID=UPI000371B48E
ychF; GTPase, translation factor; K06942
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_5119_curated_3
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1966..2409)
DNA (444bp) protein (148aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Ribonuclease VapC n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EK39_METSB
PilT domain-containing protein
SCNpilot_cont_300_bf_scaffold_5119_curated_4
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2702..3457)
DNA (756bp) protein (252aa)
pth; peptidyl-tRNA hydrolase; K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003661839
SCNpilot_cont_300_bf_scaffold_5119_curated_5
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3494..4108)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036AB574
50S ribosomal protein L25/general stress protein Ctc; K02897 large subunit ribosomal protein L25
50S ribosomal protein L25 {ECO:0000255|HAMAP-Rule:MF_01334}; General stress protein CTC {ECO:0000255|HAMAP-Rule:MF_01334}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_300_bf_scaffold_5119_curated_6
Erwinia amylovora, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4818..5150
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EBB2F
exbB; biopolymer transport exbb protein; K03561 biopolymer transport protein ExbB
Biopolymer transport exbB protein {ECO:0000313|EMBL:CBX79283.1}; TaxID=889211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia amylovora ATCC BAA-2158.;"
SCNpilot_cont_300_bf_scaffold_5119_curated_7
Paracoccus sp. 39524, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5157..5576
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035F1C65
Uncharacterized protein {ECO:0000313|EMBL:KGJ15937.1}; TaxID=1525718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 39524.;"
TonB system transport protein ExbD type-1; K03559 biopolymer transport protein ExbD
SCNpilot_cont_300_bf_scaffold_5119_curated_8
unknown

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5931..6134
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5119_curated_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6193..7245)
DNA (1053bp) protein (351aa)
prsA; ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sin
ribose-phosphate pyrophosphokinase n=1 Tax=Kaistia granuli RepID=UPI000380D6FC
SCNpilot_cont_300_bf_scaffold_5119_curated_10
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7272..7787)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003603CDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ69621.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_5119_curated_11
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8610..9677)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003696A69
Uncharacterized protein {ECO:0000313|EMBL:EAV42196.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
ATP synthase subunit beta/transription termination factor rho
SCNpilot_cont_300_bf_scaffold_5119_curated_12
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9686..10516)
DNA (831bp) protein (277aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A9320
SCNpilot_cont_300_bf_scaffold_5119_curated_13
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10684..10974
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EC3CD
Uncharacterized protein {ECO:0000313|EMBL:CCF20042.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5119_curated_14
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10978..11370)
DNA (393bp) protein (131aa)
Conserved hypothetical secreted protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDV1_XANP2
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:ABS66194.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_300_bf_scaffold_5119_curated_15
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11488..11838
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035F45FF
Uncharacterized protein {ECO:0000313|EMBL:EJN13849.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5119_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11900..12496)
DNA (597bp) protein (199aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
branched-chain amino acid aminotransferase n=1 Tax=Kaistia granuli RepID=UPI000368B2BD
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:ABS63885.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 16 items

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