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SCNpilot_cont_300_bf_scaffold_2561_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2561_curated_1
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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130..420
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B776E
Stress responsive protein {ECO:0000313|EMBL:ESX81309.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
Stress responsive A/B Barrel Domain-containing protein
SCNpilot_cont_300_bf_scaffold_2561_curated_2
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

448..1734
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361F13D
Chloride channel protein {ECO:0000313|EMBL:EJZ18658.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
chloride channel protein EriC
SCNpilot_cont_300_bf_scaffold_2561_curated_3
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1747..2355)
DNA (609bp) protein (203aa)
Rieske (2Fe-2S) domain protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZB36_METPB
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ACB79271.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_cont_300_bf_scaffold_2561_curated_4
unknown

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comp(2897..3706)
DNA (810bp) protein (270aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2561_curated_5
unknown

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comp(3709..4233)
DNA (525bp) protein (175aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2561_curated_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4326..5246)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037D1A5A
pirin
Pirin {ECO:0000313|EMBL:AGK57814.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_300_bf_scaffold_2561_curated_7
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5346..5591)
DNA (246bp) protein (82aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003763503
SCNpilot_cont_300_bf_scaffold_2561_curated_8
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5713..6171
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000371D2D4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB96291.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_2561_curated_9
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6181..7107)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037DA701
Histone deacetylase superfamily protein {ECO:0000313|EMBL:EIM72892.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
histone deacetylase superfamily protein
SCNpilot_cont_300_bf_scaffold_2561_curated_10
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7144..7893)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E4F2E
Enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:ADZ71714.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_2561_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8106..9086
DNA (981bp) protein (327aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035C3BBF
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
SCNpilot_cont_300_bf_scaffold_2561_curated_12
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9093..10034)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B3EE6
Chaperone protein {ECO:0000313|EMBL:EAV44635.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
Chaperone protein
SCNpilot_cont_300_bf_scaffold_2561_curated_13
unknown

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comp(10206..10709)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003760134
SCNpilot_cont_300_bf_scaffold_2561_curated_14
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11190..11363
DNA (174bp) protein (58aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
pdxH; pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037802BA
SCNpilot_cont_300_bf_scaffold_2561_curated_15
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11385..11771)
DNA (387bp) protein (129aa)
UPI0003CE2E59 related cluster n=1 Tax=unknown RepID=UPI0003CE2E59
Uncharacterized protein {ECO:0000313|EMBL:ESX51763.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2561_curated_16
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11915..12136)
DNA (222bp) protein (74aa)
UPI0003CE8F37 related cluster n=1 Tax=unknown RepID=UPI0003CE8F37
PhnA protein {ECO:0000313|EMBL:ESY59252.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
PhnA protein
SCNpilot_cont_300_bf_scaffold_2561_curated_17
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12306..13730)
DNA (1425bp) protein (475aa)
peptidase C69 n=1 Tax=Kaistia granuli RepID=UPI0003601421
peptidase U62 modulator of DNA gyrase; K03568 TldD protein
Peptidase U62 modulator of DNA gyrase {ECO:0000313|EMBL:ADZ71825.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_2561_curated_18
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13823..15001)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000367660D
Uncharacterized protein {ECO:0000313|EMBL:EXL10219.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
diguanylate cyclase
SCNpilot_cont_300_bf_scaffold_2561_curated_19
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15124..15735)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000360A1A7
hypothetical protein; K07006
Uncharacterized protein {ECO:0000313|EMBL:BAF89388.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_2561_curated_20
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15747..16508)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00038178E7
invasion associated locus B family protein
Invasion associated locus B family protein {ECO:0000313|EMBL:ADH87916.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_2561_curated_21
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16789..17742
DNA (954bp) protein (318aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003770F05
cytochrome c oxidase, subunit II
SCNpilot_cont_300_bf_scaffold_2561_curated_22
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17821..18465
DNA (645bp) protein (215aa)
coxA; cytochrome C oxidase polypeptide I transmembrane protein; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
cytochrome C oxidase subunit I n=1 Tax=Kaistia granuli RepID=UPI000374D55E
Putative cytochrome C oxidase polypeptide I transmembrane protein {ECO:0000313|EMBL:ADZ71819.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
Displaying 22 items

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