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SCNpilot_cont_300_bf_scaffold_4871_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_4871_curated_1
unknown

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comp(3..80)
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4871_curated_2
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(77..691)
DNA (615bp) protein (205aa)
Cobalt transporter CbiM n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J366_POLGS
cobalt transporter CbiM; K02007 cobalt/nickel transport system permease protein
Cobalt transporter CbiM {ECO:0000313|EMBL:ADZ69873.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_4871_curated_3
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(701..1480)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003817AFB
cobalt ABC transporter periplasmic binding protein CbiN
ABC cobalt transporter, periplasmic binding protein CbiN {ECO:0000313|EMBL:ADZ69874.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_4871_curated_4
Streptomyces bottropensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1893..2774
DNA (882bp) protein (294aa)
LysR family transcriptional regulator n=1 Tax=Streptomyces bottropensis ATCC 25435 RepID=M3FP04_9ACTO
LysR family transcriptional regulator {ECO:0000313|EMBL:EMF53854.1}; TaxID=1054862 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bottropensis ATCC 25435.;"
LysR-family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_4871_curated_5
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2799..4058
DNA (1260bp) protein (420aa)
Putative outer membrane protein, putative porin n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IEU1_AZOC5
outer membrane protein, porin
Putative outer membrane protein, putative porin {ECO:0000313|EMBL:BAF89533.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_4871_curated_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4071..4949)
DNA (879bp) protein (293aa)
DNA ligase D n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TSH6_TISMK
ATP-dependent DNA ligase clustered with Ku protein, LigD {ECO:0000313|EMBL:KFC69753.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
DNA ligase D
SCNpilot_cont_300_bf_scaffold_4871_curated_7
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5021..5389)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037673A9
Uncharacterized protein {ECO:0000313|EMBL:ESR22883.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
ParA/MinD-like ATPase
SCNpilot_cont_300_bf_scaffold_4871_curated_8
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5545..6825
DNA (1281bp) protein (427aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E0C8E
SCNpilot_cont_300_bf_scaffold_4871_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7223..7693
DNA (471bp) protein (157aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
surE; 5'-nucleotidase surE (Nucleoside 5'-monophosphate phosphohydrolase)(survival protein, protein damage control) (EC:3.1.3.5)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A0B8B
SCNpilot_cont_300_bf_scaffold_4871_curated_10

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7765..8076
DNA (312bp) protein (104aa)
protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000372B74E
Uncharacterized protein {ECO:0000313|EMBL:KKN87703.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying 10 items

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