ggKbase home page

SCNpilot_cont_300_bf_scaffold_3900_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3900_curated_1
unknown

Not on your lists

comp(1..111)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3900_curated_2
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(217..873)
DNA (657bp) protein (219aa)
GntR family transcriptional regulator n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000379BF9F
GntR family transcriptional regulator {ECO:0000313|EMBL:KGM35504.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_3900_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1312..2112
DNA (801bp) protein (267aa)
ABC transporter, substrate binding protein (Sugar) n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CSP9_AGRT5
sugar ABC transporter substrate-binding protein; K02058 simple sugar transport system substrate-binding protein rbh
D-galactose-binding periplasmic protein GBP {ECO:0000313|EMBL:KJX86604.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_cont_300_bf_scaffold_3900_curated_4
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2226..3260
DNA (1035bp) protein (345aa)
UPI0003CED33F related cluster n=1 Tax=unknown RepID=UPI0003CED33F
ABC transporter permease {ECO:0000313|EMBL:ESW64544.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
sugar ABC transporter permease; K10440 ribose transport system permease protein
SCNpilot_cont_300_bf_scaffold_3900_curated_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3262..4221
DNA (960bp) protein (320aa)
ABC transporter permease n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00036CBA2C
ABC transporter permease {ECO:0000313|EMBL:KGM35500.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_cont_300_bf_scaffold_3900_curated_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4224..5738
DNA (1515bp) protein (505aa)
ABC transporter permease; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
ABC transporter, nucleotide binding/ATPase protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CFC7_AGRT5
ABC transporter permease {ECO:0000313|EMBL:KGM35499.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_300_bf_scaffold_3900_curated_7
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7447..8463)
DNA (1017bp) protein (339aa)
iron ABC transporter substrate-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI000361FD8C
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:EZQ16362.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
fbpA; ABC transporter substrate-binding protein (iron); K02012 iron(III) transport system substrate-binding protein rbh
SCNpilot_cont_300_bf_scaffold_3900_curated_8
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8647..9552)
DNA (906bp) protein (302aa)
transporter n=1 Tax=Xanthobacteraceae RepID=UPI0003613E97
hypothetical protein; K07088
Uncharacterized protein {ECO:0000313|EMBL:BAF86271.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_3900_curated_9
Yersinia intermedia, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10265..10468)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003694522
Acetamidase/Formamidase {ECO:0000313|EMBL:EEQ20979.1}; TaxID=349965 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia intermedia ATCC 29909.;"
Acetamidase/Formamidase
SCNpilot_cont_300_bf_scaffold_3900_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10793..11386)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAY3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39762.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3900_curated_11
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11746..12693)
DNA (948bp) protein (316aa)
Alpha/beta hydrolase domain-containing protein n=1 Tax=Pseudomonas sp. CFII64 RepID=S6GXB9_9PSED
Alpha/beta hydrolase {ECO:0000313|EMBL:KEQ02651.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
alpha/beta hydrolase domain-containing protein
Displaying 11 items

View Taxonomy