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SCNpilot_cont_300_bf_scaffold_2708_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2708_curated_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..981
DNA (981bp) protein (327aa)
Diguanylate cyclase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3W4_9SPHN
Diguanylate cyclase {ECO:0000313|EMBL:EGD60712.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_cont_300_bf_scaffold_2708_curated_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1044..3557
DNA (2514bp) protein (838aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000360A465
DEAD/DEAH box helicase {ECO:0000313|EMBL:EKF44442.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
Lhr-like helicase
SCNpilot_cont_300_bf_scaffold_2708_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3632..4348
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003645D0C
putative ICC-like phosphoesterase; K06953
Putative ICC-like phosphoesterase {ECO:0000313|EMBL:ABS62077.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_2708_curated_4
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4388..4741)
DNA (354bp) protein (118aa)
UPI0003CECA1A related cluster n=1 Tax=unknown RepID=UPI0003CECA1A
RNA signal recognition particle 4.5S RNA {ECO:0000313|EMBL:ESY02146.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC405B00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2708_curated_5
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4845..6680)
DNA (1836bp) protein (612aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003811E42
Glycosyltransferase {ECO:0000313|EMBL:EPF00165.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
glycosyl transferase family protein
SCNpilot_cont_300_bf_scaffold_2708_curated_6
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6785..7648
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000365FAD9
ABC transporter, periplasmic amino acid-binding protein {ECO:0000313|EMBL:EJW11792.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
family 3 extracellular solute-binding protein
SCNpilot_cont_300_bf_scaffold_2708_curated_7
Cyanobium sp. PCC 7001, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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7777..8874
DNA (1098bp) protein (366aa)
Choloylglycine hydrolase, putative {ECO:0000313|EMBL:EDY38009.1}; EC=3.5.1.24 {ECO:0000313|EMBL:EDY38009.1};; TaxID=180281 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.;" source="Cyanobium sp. PCC 7001.;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003706ACE
choloylglycine hydrolase
SCNpilot_cont_300_bf_scaffold_2708_curated_8
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8906..9415)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037D3DE0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP71475.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_cont_300_bf_scaffold_2708_curated_9
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9813..9911
DNA (99bp) protein (33aa)
lysK; lysyl-tRNA synthetase; K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177, ECO:0000313|EMBL:ABG61422.1};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Lysine--tRNA ligase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MF3_MESSB
Displaying 9 items

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