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SCNpilot_cont_300_bf_scaffold_2425_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2425_curated_1
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..245)
DNA (243bp) protein (81aa)
ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI000370E6D2
ABC transporter permease {ECO:0000313|EMBL:ESZ46535.1}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_2425_curated_2
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(245..1225)
DNA (981bp) protein (327aa)
sugar ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI00037695F3
Sugar ABC transporter permease {ECO:0000313|EMBL:ESZ11513.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_2425_curated_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1313..2560)
DNA (1248bp) protein (416aa)
ABC transporter substrate-binding protein n=1 Tax=Kaistia granuli RepID=UPI00036F5EEB
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDX37930.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC-type sugar transport system, periplasmic component
SCNpilot_cont_300_bf_scaffold_2425_curated_4
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2619..3668)
DNA (1050bp) protein (350aa)
LacI family transcriptional regulator n=1 Tax=Kaistia granuli RepID=UPI0003671B91
periplasmic binding protein/LacI transcriptional regulator; K02529 LacI family transcriptional regulator
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ADV11844.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_300_bf_scaffold_2425_curated_5
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3868..4281)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380FC73
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ37337.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_300_bf_scaffold_2425_curated_6
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4728..7073
DNA (2346bp) protein (782aa)
MscS mechanosensitive ion channel n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XAL8_SINMM
mechanosensitive ion channel protein MscS
MscS mechanosensitive ion channel {ECO:0000313|EMBL:AEH77876.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_cont_300_bf_scaffold_2425_curated_7
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7165..7773
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000374190E
SCP-like extracellular protein
SCP-like extracellular protein {ECO:0000313|EMBL:BAF86548.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_2425_curated_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7778..8665)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F34CC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07256.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_2425_curated_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9676..11115)
DNA (1440bp) protein (480aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035C44AF
Multi antimicrobial extrusion protein MatE {ECO:0000313|EMBL:CDX49263.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
polysaccharide biosynthesis protein
SCNpilot_cont_300_bf_scaffold_2425_curated_10
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11245..11553
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E3E62
SirA family protein {ECO:0000313|EMBL:GAK45491.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SirA-like protein
SCNpilot_cont_300_bf_scaffold_2425_curated_11
unknown

Not on your lists

comp(11721..12128)
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2425_curated_12
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12573..13901
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037104AD
extensin family protein
Extensin family protein {ECO:0000313|EMBL:ABS67716.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_300_bf_scaffold_2425_curated_13
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14033..14662
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003662FE2
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EUB97588.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
short chain dehydrogenase
SCNpilot_cont_300_bf_scaffold_2425_curated_14
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14743..15270
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000378B1AE
CrtK {ECO:0000313|EMBL:KJB92536.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
TspO and MBR like protein; K07185 tryptophan-rich sensory protein
SCNpilot_cont_300_bf_scaffold_2425_curated_15
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15362..15553
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003802C09
Uncharacterized protein {ECO:0000313|EMBL:ETR77117.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2425_curated_16
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16218..16796
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000366DFE2
Uncharacterized protein {ECO:0000313|EMBL:EAV42707.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
peptidase, S54 (Rhomboid) family
SCNpilot_cont_300_bf_scaffold_2425_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16898..17647
DNA (750bp) protein (250aa)
electron transfer flavoprotein subunit beta n=1 Tax=Kaistia granuli RepID=UPI0003666FF7
Electron transfer flavoprotein small subunit {ECO:0000313|EMBL:KFC73269.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
electron transfer flavoprotein beta subunit-like protein; K03521 electron transfer flavoprotein beta subunit
SCNpilot_cont_300_bf_scaffold_2425_curated_18
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17649..18584
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037C2DC9
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:ACB96832.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_2425_curated_19
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18726..19625
DNA (900bp) protein (300aa)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:EXL06596.1}; EC=1.1.1.157 {ECO:0000313|EMBL:EXL06596.1};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Kaistia granuli RepID=UPI0003815F3F
SCNpilot_cont_300_bf_scaffold_2425_curated_20
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19693..20112
DNA (420bp) protein (140aa)
Major facilitator superfamily protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FSN9_RHIML
MFS transporter {ECO:0000313|EMBL:KGD89195.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
major facilitator superfamily protein
SCNpilot_cont_300_bf_scaffold_2425_curated_21
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20215..20745
DNA (531bp) protein (177aa)
MFS transporter n=1 Tax=Rhizobium meliloti RepID=UPI0003808DDD
Arabinose efflux permease
Permease, MFS {ECO:0000313|EMBL:AAK65943.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_cont_300_bf_scaffold_2425_curated_22
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20813..21487)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036825F1
thioredoxin-like protein
Thioredoxin-like protein {ECO:0000313|EMBL:ADZ68562.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_2425_curated_23
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21521..22921
DNA (1401bp) protein (467aa)
argininosuccinate lyase 1; K01755 argininosuccinate lyase [EC:4.3.2.1]
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
argininosuccinate lyase n=1 Tax=Kaistia granuli RepID=UPI00036710D4
SCNpilot_cont_300_bf_scaffold_2425_curated_24
unknown

Not on your lists

22950..23219
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361E6C3
SCNpilot_cont_300_bf_scaffold_2425_curated_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23357..24625
DNA (1269bp) protein (423aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] rbh
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037BE47E
SCNpilot_cont_300_bf_scaffold_2425_curated_26
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24733..26151
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036ED4E8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ68565.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_2425_curated_27
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26325..27209
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036ED4E8
Uncharacterized protein {ECO:0000313|EMBL:ESX92908.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC405B00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2425_curated_28
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27217..27615)
DNA (399bp) protein (133aa)
Response regulator receiver (CheY-like protein) n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NX41_9RHOB
Response regulator receiver (CheY-like protein) {ECO:0000313|EMBL:EAV42690.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
response regulator receiver protein
SCNpilot_cont_300_bf_scaffold_2425_curated_29
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27648..28187)
DNA (540bp) protein (180aa)
hpt; Hypoxanthine-guanine phosphoribosyltransferase; K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:AEG05381.1}; EC=2.4.2.8 {ECO:0000313|EMBL:AEG05381.1};; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035FAE70
SCNpilot_cont_300_bf_scaffold_2425_curated_30
bacterium YEK0313, Bacteria

Not on your lists

comp(28189..28641)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037C292F
Uncharacterized protein {ECO:0000313|EMBL:CEJ10987.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Zinc finger-domain-containing protein
Displaying items 1-30 of 40 in total

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