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SCNpilot_cont_300_bf_scaffold_3528_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3528_curated_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..172)
DNA (171bp) protein (57aa)
Chromosome segregation and condensation protein, ScpB n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ53_STAND
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_3528_curated_2
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1130..2164)
DNA (1035bp) protein (345aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
glycoside hydrolase family protein; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037DC50B
SCNpilot_cont_300_bf_scaffold_3528_curated_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2224..2460)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A0BFA
hypothetical protein
Sporulation related {ECO:0000313|EMBL:ABE40022.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_300_bf_scaffold_3528_curated_4
unknown

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2883..3224
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3528_curated_5

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comp(4036..5793)
DNA (1758bp) protein (586aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037572CF
Uncharacterized protein {ECO:0000313|EMBL:KKN84192.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_300_bf_scaffold_3528_curated_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5848..7062)
DNA (1215bp) protein (405aa)
deoxyguanosinetriphosphate triphosphohydrolase subfamily protein; K01129 dGTPase [EC:3.1.5.1]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000382753B
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_3528_curated_7
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7162..7491
DNA (330bp) protein (110aa)
heme biosynthesis protein HemY n=1 Tax=Kaistia granuli RepID=UPI00037438E1
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:EIM28499.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3528_curated_8
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7710..8264)
DNA (555bp) protein (185aa)
6-phospho 3-hexuloisomerase; K08094 6-phospho-3-hexuloisomerase [EC:5.3.1.27]
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000382D3F1
Tax=BJP_IG2158_Rhodobacterales_64_37
SCNpilot_cont_300_bf_scaffold_3528_curated_9
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8344..8484)
DNA (141bp) protein (47aa)
amn; AMP nucleosidase (EC:3.2.2.4); K01241 AMP nucleosidase [EC:3.2.2.4]
AMP nucleosidase {ECO:0000256|HAMAP-Rule:MF_01932}; EC=3.2.2.4 {ECO:0000256|HAMAP-Rule:MF_01932};; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
Nucleosidase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L096_BORA1
SCNpilot_cont_300_bf_scaffold_3528_curated_10

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8809..9930
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AHW9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD61222.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_300_bf_scaffold_3528_curated_11
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9887..10177)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VHZ4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJM99589.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3528_curated_12
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10164..10325)
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VHZ4_9RHIZ
Activator of Hsp90 ATPase 1-like protein {ECO:0000313|EMBL:KGB58324.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
SCNpilot_cont_300_bf_scaffold_3528_curated_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10325..10660)
DNA (336bp) protein (112aa)
Transcriptional regulator n=1 Tax=Asticcacaulis sp. AC460 RepID=V4P1C2_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KDP74914.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_3528_curated_14
unknown

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10831..11070
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3528_curated_15

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comp(11239..12699)
DNA (1461bp) protein (487aa)
MFS transporter n=1 Tax=Streptomyces sp. 303MFCol5.2 RepID=UPI0003680F77
Drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family {ECO:0000313|EMBL:AIA15371.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
EmrB/QacA subfamily drug resistance transporter
SCNpilot_cont_300_bf_scaffold_3528_curated_16
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12948..13730
DNA (783bp) protein (261aa)
exodeoxyribonuclease III; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
exodeoxyribonuclease III n=1 Tax=Kaistia granuli RepID=UPI0003758369
Exodeoxyribonuclease III {ECO:0000313|EMBL:EKF16989.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_300_bf_scaffold_3528_curated_17
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13727..14143
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000378BC24
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAY95523.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
SCNpilot_cont_300_bf_scaffold_3528_curated_18
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14148..14423
DNA (276bp) protein (92aa)
competence protein TfoX n=1 Tax=Ponticaulis koreensis RepID=UPI0003B4D9FE
Uncharacterized protein {ECO:0000313|EMBL:KFG70475.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
Putative regulatory protein, TfoX family
Displaying 18 items

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