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SCNpilot_cont_300_bf_scaffold_2430_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2430_curated_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..219
DNA (219bp) protein (73aa)
Probable DNA repair protein RTCIAT899_PC09425 n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LY95_RHITR
putative DNA repair protein
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_2430_curated_2
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(235..1881)
DNA (1647bp) protein (549aa)
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
UPI0003CFFAC9 related cluster n=1 Tax=unknown RepID=UPI0003CFFAC9
DNA ligase {ECO:0000313|EMBL:KGJ12413.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
SCNpilot_cont_300_bf_scaffold_2430_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2743..3561)
DNA (819bp) protein (273aa)
Probable DNA repair protein USDA257_c16590 n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X2Z2_RHIFR
DNA repair protein
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_cont_300_bf_scaffold_2430_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3743..5530
DNA (1788bp) protein (596aa)
malto-oligosyltrehalose trehalohydrolase; K01236 maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077
Malto-oligosyltrehalose trehalohydrolase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1M7_STAND
SCNpilot_cont_300_bf_scaffold_2430_curated_5
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6423..6953)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003749D29
Uncharacterized protein {ECO:0000313|EMBL:ETR78654.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
N-acetyltransferase GCN5
SCNpilot_cont_300_bf_scaffold_2430_curated_6
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6950..10111)
DNA (3162bp) protein (1054aa)
acriflavine resistance protein B n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037FC527
Acriflavine resistance protein B {ECO:0000313|EMBL:KJF73723.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hydrophobe/amphiphile efflux protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_cont_300_bf_scaffold_2430_curated_7
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10124..10759)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003828142
Acriflavine resistance protein a {ECO:0000313|EMBL:EJZ22527.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
acriflavine resistance protein a
SCNpilot_cont_300_bf_scaffold_2430_curated_8
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11405..12088
DNA (684bp) protein (228aa)
chemotaxis protein CheY n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003632FFC
Chemotaxis protein CheY {ECO:0000313|EMBL:KJF73722.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
two component transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2430_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12093..13175
DNA (1083bp) protein (361aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036FACE0
periplasmic sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_2430_curated_10
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13363..14769)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYR4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDH47110.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2430_curated_11
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14939..15955
DNA (1017bp) protein (339aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89CX9_BRADU
transcriptional regulator
Transcriptional regulatory protein {ECO:0000313|EMBL:BAC52931.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_300_bf_scaffold_2430_curated_12
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

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comp(16179..16361)
DNA (183bp) protein (61aa)
Epoxide hydrolase domain protein n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6WBY2_KINRD
epoxide hydrolase
Epoxide hydrolase domain protein {ECO:0000313|EMBL:ABS04321.1}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
SCNpilot_cont_300_bf_scaffold_2430_curated_13
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16615..16959)
DNA (345bp) protein (115aa)
Wenxma_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ70403.1}; EC=1.10.3.- {ECO:0000313|EMBL:KIQ70403.1};; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003768B5C
cytochrome C oxidase subunit IV; K02300 cytochrome o ubiquinol oxidase operon protein cyoD
SCNpilot_cont_300_bf_scaffold_2430_curated_14

Not on your lists

comp(16956..17588)
DNA (633bp) protein (211aa)
cytochrome c oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-]
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003761912
Uncharacterized protein {ECO:0000313|EMBL:KKN09923.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_300_bf_scaffold_2430_curated_15

Not on your lists

comp(17585..19066)
DNA (1482bp) protein (494aa)
cytochrome-c oxidase (EC:1.9.3.1); K02298 cytochrome o ubiquinol oxidase subunit I [EC:1.10.3.-]
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035E098C
Uncharacterized protein {ECO:0000313|EMBL:KKN09922.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying 15 items

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