ggKbase home page

SCNpilot_cont_300_bf_scaffold_1624_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1624_curated_1
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..510)
DNA (510bp) protein (170aa)
potA; putrescine/spermidine ABC transporter ATPase protein (EC:3.6.3.31); K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000360BB74
Uncharacterized protein {ECO:0000313|EMBL:KFI28886.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodobacter enshiensis.;"
SCNpilot_cont_300_bf_scaffold_1624_curated_2
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

741..1775
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000372857B
Transcriptional regulator {ECO:0000313|EMBL:EJN05868.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
LacI family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1624_curated_3
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1928..3316
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036DB43E
Probable sorbitol-binding periplasmic protein {ECO:0000313|EMBL:EAR51085.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
family 1 extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_1624_curated_4
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3506..4366
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363D7BA
Uncharacterized protein {ECO:0000313|EMBL:EAR49657.1}; Flags: Fragment;; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
sugar ABC transporter permease
SCNpilot_cont_300_bf_scaffold_1624_curated_5
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4363..5310
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035D53A7
Sugar ABC transporter permease protein {ECO:0000313|EMBL:EAR49656.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
Binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_cont_300_bf_scaffold_1624_curated_6
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5307..5942
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037E0470
Uncharacterized protein {ECO:0000313|EMBL:EAR49654.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
creatinine amidohydrolase
SCNpilot_cont_300_bf_scaffold_1624_curated_7
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

5939..6865
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037356F2
putative metal-dependent hydrolase with the TIM-barrel fold
Tax=CSP1_3_Armatimonadetes
SCNpilot_cont_300_bf_scaffold_1624_curated_8
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6865..8361
DNA (1497bp) protein (499aa)
xylulokinase (EC:2.7.1.17); K00854 xylulokinase [EC:2.7.1.17]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037A9F2B
Xylulokinase {ECO:0000313|EMBL:EAR49653.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
SCNpilot_cont_300_bf_scaffold_1624_curated_9
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8403..8750
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035D0D64
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:EPX86059.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
endoribonuclease L-PSP
SCNpilot_cont_300_bf_scaffold_1624_curated_10
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8756..9463)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HGT7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96748.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
glutamine amidotransferase class-I
SCNpilot_cont_300_bf_scaffold_1624_curated_11
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9538..10212)
DNA (675bp) protein (225aa)
Putative demethylmenaquinone methyltransferase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z782_9BACT
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:KJB96500.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
demethylmenaquinone methyltransferase
SCNpilot_cont_300_bf_scaffold_1624_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10220..11059)
DNA (840bp) protein (280aa)
SMP-30/Gluconolaconase/LRE domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y222_MESOW
SMP-30/Gluconolaconase/LRE domain protein {ECO:0000313|EMBL:CDX13076.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SMP-30/Gluconolaconase/LRE domain-containing protein
SCNpilot_cont_300_bf_scaffold_1624_curated_13
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11056..12819)
DNA (1764bp) protein (588aa)
coenzyme A transferase; K01039 glutaconate CoA-transferase, subunit A [EC:2.8.3.12]
UPI0003CEA96B related cluster n=1 Tax=unknown RepID=UPI0003CEA96B
CoA transferase {ECO:0000313|EMBL:ESY75692.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_cont_300_bf_scaffold_1624_curated_14
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13070..14089)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y220_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH87136.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_300_bf_scaffold_1624_curated_15
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14086..14895)
DNA (810bp) protein (270aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y219_MESOW
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AEH87135.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_300_bf_scaffold_1624_curated_16
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14900..16105)
DNA (1206bp) protein (402aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y218_MESOW
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:AEH87134.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_300_bf_scaffold_1624_curated_17
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16133..16837)
DNA (705bp) protein (235aa)
Short-chain dehydrogenase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FHK7_9RHIZ
Short-chain dehydrogenase {ECO:0000313|EMBL:ESX70568.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
short-chain dehydrogenase/reductase SDR
Displaying 17 items

View Taxonomy