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SCNpilot_cont_300_bf_scaffold_2376_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2376_curated_1
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..394
DNA (393bp) protein (131aa)
bcp; putative peroxiredoxin bcp (EC:1.11.1.15)
Bacterioferritin comigratory protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS72_9RHIZ
Bacterioferritin comigratory protein {ECO:0000313|EMBL:EHK56401.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_cont_300_bf_scaffold_2376_curated_2
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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399..1220
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000370E0DE
Uncharacterized protein {ECO:0000313|EMBL:EAV44195.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2376_curated_3
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1333..2604
DNA (1272bp) protein (424aa)
Membrane protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FNJ8_9RHIZ
Membrane protein {ECO:0000313|EMBL:ESX81996.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
transmembrane peptidase
SCNpilot_cont_300_bf_scaffold_2376_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2643..3812)
DNA (1170bp) protein (390aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
tyrosyl-tRNA synthetase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037631C8
SCNpilot_cont_300_bf_scaffold_2376_curated_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3938..5020)
DNA (1083bp) protein (361aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
aroG; phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] rbh
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000371BEAA
SCNpilot_cont_300_bf_scaffold_2376_curated_6
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5283..6383
DNA (1101bp) protein (367aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000376AB24
anmK; anhydro-N-acetylmuramic acid kinase
SCNpilot_cont_300_bf_scaffold_2376_curated_7
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6509..8488
DNA (1980bp) protein (660aa)
Potassium/proton antiporter n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LJ66_9PROT
Potassium/proton antiporter {ECO:0000313|EMBL:EKF09876.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
cvrA; transmembrane cell volume regulation protein A; K11105 cell volume regulation protein A
SCNpilot_cont_300_bf_scaffold_2376_curated_8
Asticcacaulis sp. AC402, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8333..8929)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4QA65_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ76088.1}; TaxID=1282361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC402.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2376_curated_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9554..10120
DNA (567bp) protein (189aa)
Putative RNA polymerase sigma factor n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QK23_9RHIZ
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:CDP53087.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_2376_curated_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10120..11193
DNA (1074bp) protein (358aa)
Uncharacterized protein yfbK n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A7N0_RHIFH
Von Willebrand factor type A domain protein {ECO:0000313|EMBL:CDP53088.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein; K07114 uncharacterized protein
Displaying 10 items

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