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SCNpilot_cont_300_bf_scaffold_1705_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1705_curated_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..421)
DNA (420bp) protein (140aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000363E6CE
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase {ECO:0000313|EMBL:KKB80679.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_cont_300_bf_scaffold_1705_curated_2
Pluralibacter gergoviae, Pluralibacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(444..1232)
DNA (789bp) protein (263aa)
N-acyl homoserine lactonase AttM n=2 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=AHLLM_AGRT5 rbh
Beta-lactamase {ECO:0000313|EMBL:KJM58411.1}; TaxID=61647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pluralibacter.;" source="Pluralibacter gergoviae (Enterobacter gergoviae).;"
Zn-dependent gamma butyryl lactone lactonase
SCNpilot_cont_300_bf_scaffold_1705_curated_3
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1258..1683)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5Z0F6_NOCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD56085.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
SCNpilot_cont_300_bf_scaffold_1705_curated_4
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1727..2716)
DNA (990bp) protein (330aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Frankia sp. CN3 RepID=G6HD48_9ACTO
Putative ABC transporter permease protein {ECO:0000313|EMBL:CCV07541.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
ABC transporter permease; K10440 ribose transport system permease protein
SCNpilot_cont_300_bf_scaffold_1705_curated_5
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2738..4264)
DNA (1527bp) protein (509aa)
ABC transporter related n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EU37_9RHIZ
ABC transporter related {ECO:0000313|EMBL:CCV07540.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
ABC transporter
SCNpilot_cont_300_bf_scaffold_1705_curated_6
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4277..5539)
DNA (1263bp) protein (421aa)
Putative ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ERQ1_9RHIZ
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:CCV07539.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
ABC transporter substrate-binding protein; K10439 ribose transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_1705_curated_7
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5819..6595
DNA (777bp) protein (259aa)
short-chain dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037AC338
Short chain dehydrogenase/reductase {ECO:0000313|EMBL:EJZ31793.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_1705_curated_8
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6691..7419
DNA (729bp) protein (243aa)
IclR helix-turn-helix domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XA07_9BURK
IclR helix-turn-helix domain protein {ECO:0000313|EMBL:EFF76272.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
Transcriptional regulator, IclR family
SCNpilot_cont_300_bf_scaffold_1705_curated_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7424..8041)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037DAD9F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91262.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_1705_curated_10
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8495..9019
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DBR9_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL05439.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_300_bf_scaffold_1705_curated_11
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9081..10184)
DNA (1104bp) protein (368aa)
Regulatory protein MarR n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8L6_MESCW
MarR family transcriptional regulator
Regulatory protein MarR {ECO:0000313|EMBL:ADV11788.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_300_bf_scaffold_1705_curated_12
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10234..10887)
DNA (654bp) protein (218aa)
Hydrolase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y3C9_MESOW
hydrolase
Hydrolase {ECO:0000313|EMBL:AEH87236.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_300_bf_scaffold_1705_curated_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11175..12251
DNA (1077bp) protein (359aa)
Rcorf71 n=1 Tax=Agrobacterium rhizogenes RepID=A8W080_AGRRH
Rcorf71 {ECO:0000313|EMBL:ABW33628.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ABC transporter periplasmic protein
Displaying 13 items

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