ggKbase home page

SCNpilot_cont_300_bf_scaffold_2348_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2348_curated_1
unknown

Not on your lists

2..442
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2348_curated_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

672..947
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036758EA
Uncharacterized protein {ECO:0000313|EMBL:AJP70658.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2348_curated_3
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1117..2121
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037B161D
Thiosulfate transporter subunit {ECO:0000313|EMBL:KHJ54662.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
sulfate-binding protein of ABC transporter; K02048 sulfate transport system substrate-binding protein rbh
SCNpilot_cont_300_bf_scaffold_2348_curated_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2118..2996
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363F5B1
Putative sulfate uptake ABC transporter, permease protein {ECO:0000313|EMBL:AHK45901.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
putative sulfate transport system permease; K02046 sulfate transport system permease protein
SCNpilot_cont_300_bf_scaffold_2348_curated_5
unknown

Not on your lists

comp(2989..3315)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2348_curated_6
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3489..3761
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000382CACA
sulfate transport system permease; K02047 sulfate transport system permease protein
Sulfate ABC transporter permease {ECO:0000313|EMBL:KJF73053.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_cont_300_bf_scaffold_2348_curated_7
unknown

Not on your lists

3825..4091
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2348_curated_8
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5430..6020
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JY8_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG62287.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_300_bf_scaffold_2348_curated_9
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6010..6570)
DNA (561bp) protein (187aa)
UPI0003CF9940 related cluster n=1 Tax=unknown RepID=UPI0003CF9940
Transposase {ECO:0000313|EMBL:KGB81391.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2348_curated_10
unknown

Not on your lists

6707..6805
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2348_curated_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6768..7379)
DNA (612bp) protein (204aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG07881.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_300_bf_scaffold_2348_curated_12
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7510..8433
DNA (924bp) protein (308aa)
dnaE; DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000373445E
SCNpilot_cont_300_bf_scaffold_2348_curated_13
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8461..10377
DNA (1917bp) protein (639aa)
dnaE; DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000373445E
SCNpilot_cont_300_bf_scaffold_2348_curated_14
Pseudomonas mandelii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11474..12175)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI00029A74F8
Uncharacterized protein {ECO:0000313|EMBL:AHZ68079.1}; TaxID=1147786 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mandelii JR-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2348_curated_15
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12257..13402
DNA (1146bp) protein (382aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
queA; S-adenosylmethionine tRNA ribosyltransferase (EC:5.-.-.-); K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037165D9
SCNpilot_cont_300_bf_scaffold_2348_curated_16
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13495..14625
DNA (1131bp) protein (377aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
tgt; queuine tRNA-ribosyltransferase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
queuine tRNA-ribosyltransferase n=1 Tax=Kaistia granuli RepID=UPI000374D5D9
SCNpilot_cont_300_bf_scaffold_2348_curated_17
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14726..14962
DNA (237bp) protein (79aa)
AsnC family transcriptional regulator n=1 Tax=Kaistia granuli RepID=UPI00036B4CCB
AsnC family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:ESX82430.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_cont_300_bf_scaffold_2348_curated_18
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14959..16083)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037BF0B4
Putative threonine-phosphate decarboxylase {ECO:0000313|EMBL:EPY02809.1}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
class I and II aminotransferase; K02225 cobalamin biosynthetic protein CobC
SCNpilot_cont_300_bf_scaffold_2348_curated_19
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16091..16372)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Rhizobium phaseoli RepID=UPI0002E08AF9
Integrase {ECO:0000313|EMBL:EPE98449.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Site-specific recombinase XerD
SCNpilot_cont_300_bf_scaffold_2348_curated_20
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17820..18014
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A121_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:CDH86826.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2348_curated_21
unknown

Not on your lists

18092..18391
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2348_curated_22
unknown

Not on your lists

18388..18645
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2348_curated_23
unknown

Not on your lists

18642..18836
DNA (195bp) protein (65aa)
Predicted protein n=64 Tax=Brucella RepID=C9TT99_BRUPB
SCNpilot_cont_300_bf_scaffold_2348_curated_24
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18833..19372
DNA (540bp) protein (180aa)
ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI000380841F
SCNpilot_cont_300_bf_scaffold_2348_curated_25
unknown

Not on your lists

19369..19674
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2348_curated_26
unknown

Not on your lists

19674..19961
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2348_curated_27
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19958..20755
DNA (798bp) protein (266aa)
UPI0003CF4D6A related cluster n=1 Tax=unknown RepID=UPI0003CF4D6A
Uncharacterized protein {ECO:0000313|EMBL:ESY60657.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
SCNpilot_cont_300_bf_scaffold_2348_curated_28
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20752..20931
DNA (180bp) protein (60aa)
UPI0003CF7CFF related cluster n=1 Tax=unknown RepID=UPI0003CF7CFF
Uncharacterized protein {ECO:0000313|EMBL:ESY60656.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
SCNpilot_cont_300_bf_scaffold_2348_curated_29
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21191..21421
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F5M1I8_RHOSH
Wenxma_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ69447.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
SCNpilot_cont_300_bf_scaffold_2348_curated_30
unknown

Not on your lists

comp(21418..21792)
DNA (375bp) protein (125aa)

This feature has no annotations

Displaying items 1-30 of 33 in total

View Taxonomy