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SCNpilot_cont_300_bf_scaffold_397_curated

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_397_curated_1
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1238)
DNA (1236bp) protein (412aa)
UPI0003CE19A0 related cluster n=1 Tax=unknown RepID=UPI0003CE19A0
Uncharacterized protein {ECO:0000313|EMBL:ESW64446.1}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_397_curated_2
unknown

Not on your lists

1856..2008
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_397_curated_3
unknown

Not on your lists

comp(2005..2241)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_397_curated_4
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(2433..2855)
DNA (423bp) protein (141aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TEI3_RICCO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEF25729.1}; Flags: Fragment;; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_cont_300_bf_scaffold_397_curated_5
unknown

Not on your lists

comp(3610..3870)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_397_curated_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4067..4525
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LY33_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB75035.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_397_curated_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4639..5436)
DNA (798bp) protein (266aa)
Putative transcriptional regulator n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UF80_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:ENN88828.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_397_curated_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5617..6645
DNA (1029bp) protein (343aa)
Proline racemase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6N2_9RHIZ
Proline racemase {ECO:0000313|EMBL:ENN88826.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
proline racemase
SCNpilot_cont_300_bf_scaffold_397_curated_9
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6732..8471
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4L7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN88825.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
calT6; protein CalT6
SCNpilot_cont_300_bf_scaffold_397_curated_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8549..10399
DNA (1851bp) protein (617aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U8C2_9RHIZ
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ENN88824.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC transporter ATP-binding protein
SCNpilot_cont_300_bf_scaffold_397_curated_11
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10396..11364
DNA (969bp) protein (323aa)
Dipeptide transport system permease protein DppC n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UF74_9RHIZ
Dipeptide transport system permease protein DppC {ECO:0000313|EMBL:ENN88823.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
appC; oligopeptide transport system permease AppC
SCNpilot_cont_300_bf_scaffold_397_curated_12
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11361..12314
DNA (954bp) protein (318aa)
Putative peptide transport system permease protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VCN8_9RHIZ
Putative peptide transport system permease protein {ECO:0000313|EMBL:ENN88822.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
peptide transport system permease protein
SCNpilot_cont_300_bf_scaffold_397_curated_13
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12324..13625
DNA (1302bp) protein (434aa)
putative proline iminopeptidase (EC:3.4.11.5); K01259 proline iminopeptidase [EC:3.4.11.5]
Putative proline iminopeptidase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6M5_9RHIZ
Putative proline iminopeptidase {ECO:0000313|EMBL:ENN88821.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_300_bf_scaffold_397_curated_14
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13622..15436
DNA (1815bp) protein (605aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4L2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN88820.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
X-Pro aminopeptidase
SCNpilot_cont_300_bf_scaffold_397_curated_15
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15730..17334)
DNA (1605bp) protein (535aa)
Transcriptional regulator protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V5J0_9RHIZ
Sigma54-dependent transcriptional activator RtcR {ECO:0000313|EMBL:AIC30517.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
sigma-54 interacting transcription regulator protein; K14414 transcriptional regulatory protein RtcR
SCNpilot_cont_300_bf_scaffold_397_curated_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17545..19101
DNA (1557bp) protein (519aa)
TROVE domain protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JEQ5_AGRRK
TROVE domain protein; K11089 60 kDa SS-A/Ro ribonucleoprotein
TROVE domain protein {ECO:0000313|EMBL:ACM28474.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_300_bf_scaffold_397_curated_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19640..21046
DNA (1407bp) protein (469aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
RNA-splicing ligase RtcB n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VZ81_RHILT
hypothetical protein
SCNpilot_cont_300_bf_scaffold_397_curated_18
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21259..22533)
DNA (1275bp) protein (425aa)
tagatose-6-phosphate kinase; K00917 tagatose 6-phosphate kinase [EC:2.7.1.144]
Putative tagatose 6-phosphate kinase kbaZ n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UD25_9RHIZ
Putative tagatose 6-phosphate kinase kbaZ {ECO:0000313|EMBL:ENN88058.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_300_bf_scaffold_397_curated_19
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22530..23492)
DNA (963bp) protein (321aa)
Ribokinase-like domain-containing protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U624_9RHIZ
Ribokinase-like domain-containing protein {ECO:0000313|EMBL:ENN88059.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ribokinase-like domain-containing protein
SCNpilot_cont_300_bf_scaffold_397_curated_20
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23489..24484)
DNA (996bp) protein (332aa)
Ribose transport system permease protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V2K2_9RHIZ
Ribose transport system permease protein {ECO:0000313|EMBL:ENN88060.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
monosaccharide-transporting ATPase; K10440 ribose transport system permease protein
SCNpilot_cont_300_bf_scaffold_397_curated_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24481..26025)
DNA (1545bp) protein (515aa)
ABC transporter-like protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Ribose import ATP-binding protein rbsA n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4N5_9RHIZ
Ribose import ATP-binding protein rbsA {ECO:0000313|EMBL:ENN88061.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_300_bf_scaffold_397_curated_22
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26175..27077)
DNA (903bp) protein (301aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1X293_9RHIZ
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ERI14924.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
monosaccharide-transporting ATPase; K10439 ribose transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_397_curated_23
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27434..28462
DNA (1029bp) protein (343aa)
Periplasmic binding protein/LacI transcriptional regulator/transcriptional repressor RbsR n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UD34_9RHIZ
Periplasmic binding protein/LacI transcriptional regulator/transcriptional repressor RbsR {ECO:0000313|EMBL:ENN88063.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
periplasmic-binding protein/LacI transcriptional regulator
SCNpilot_cont_300_bf_scaffold_397_curated_24
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28876..29496
DNA (621bp) protein (207aa)
Bacterial regulatory protein, GntR family protein 58 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HVB4_ACHXA
GntR family transcriptional regulator {ECO:0000313|EMBL:KGY26777.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_397_curated_25
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29509..30357
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HVB3_ACHXA
Permease {ECO:0000313|EMBL:KGY26776.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
hypothetical protein; K07090
SCNpilot_cont_300_bf_scaffold_397_curated_26
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30367..30687
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003047132
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP18685.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_cont_300_bf_scaffold_397_curated_27
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30804..32033)
DNA (1230bp) protein (410aa)
UPI0003CEC200 related cluster n=1 Tax=unknown RepID=UPI0003CEC200
Gluconate 2-dehydrogenase (Acceptor) {ECO:0000313|EMBL:CDN50851.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
cytochrome c, mono- and diheme variants family
SCNpilot_cont_300_bf_scaffold_397_curated_28
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32030..33796)
DNA (1767bp) protein (589aa)
gluconate 2-dehydrogenase (acceptor) (EC:1.1.99.3); K06151 gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3]
Choline dehydrogenase-like flavoprotein n=1 Tax=Rhizobium sp. CF080 RepID=J2K3H7_9RHIZ
Gluconate 2-dehydrogenase flavoprotein {ECO:0000313|EMBL:CDN56999.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_cont_300_bf_scaffold_397_curated_29
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33807..34562)
DNA (756bp) protein (252aa)
hypothetical protein; K06152 gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CMX5_9RHIZ
Gluconate 2-dehydrogenase gamma chain {ECO:0000313|EMBL:CDN56998.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_cont_300_bf_scaffold_397_curated_30
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35066..38161)
DNA (3096bp) protein (1032aa)
Resistance nodulation cell division (RND) drug efflux pump, inner membrane component n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LT95_RHITR
resistance nodulation cell division (RND) drug efflux pump, inner membrane component
Resistance nodulation cell division (RND) drug efflux pump, inner membrane component {ECO:0000313|EMBL:AGB73916.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying items 1-30 of 50 in total

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