ggKbase home page

SCNpilot_cont_300_bf_scaffold_317_curated

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_317_curated_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(340..765)
DNA (426bp) protein (142aa)
VapC ribonuclease Y4jK; Short=RNase Y4jK;; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00265};; Putative plasmid stability protein Y4jK; Toxin Y4jK; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
VapC ribonuclease Y4jK n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Y4JK_RHISN
stbB; plasmid stability protein StbB; K07062
SCNpilot_cont_300_bf_scaffold_317_curated_2
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(762..1019)
DNA (258bp) protein (86aa)
plasmid stability protein stbC n=1 Tax=Sinorhizobium medicae RepID=UPI000379531A
Plasmid stability protein StbC {ECO:0000313|EMBL:AJD54292.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
plasmid stability protein StbC
SCNpilot_cont_300_bf_scaffold_317_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1258..2172
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UH84_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EGP53953.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
Resolvase, N terminal domain family
SCNpilot_cont_300_bf_scaffold_317_curated_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2425..3339)
DNA (915bp) protein (305aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BQR5_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI08158.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_317_curated_5
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3532..4815)
DNA (1284bp) protein (428aa)
plasmid replication protein RepCa2 n=1 Tax=Rhizobium leguminosarum RepID=UPI0003762B3D
Replication protein C {ECO:0000313|EMBL:EUB98269.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
repC; replication protein C
SCNpilot_cont_300_bf_scaffold_317_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5053..6102)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Ancylobacter sp. FA202 RepID=UPI000380C167
Plasmid partitioning protein RepB {ECO:0000313|EMBL:EJC64751.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
plasmid partitioning protein RepB
SCNpilot_cont_300_bf_scaffold_317_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6099..7322)
DNA (1224bp) protein (408aa)
chromosome partitioning protein ParA n=1 Tax=Ancylobacter sp. FA202 RepID=UPI000367421D
plasmid partitioning protein RepA
Plasmid partitioning protein RepA {ECO:0000313|EMBL:ACS60297.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_300_bf_scaffold_317_curated_8
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7710..8333
DNA (624bp) protein (208aa)
acyl-homoserine-lactone synthase (EC:2.3.1.184)
AHL synthetase-like protein n=1 Tax=Ensifer adhaerens RepID=K4K584_ENSAD
AHL synthetase-like protein {ECO:0000313|EMBL:BAR63383.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_300_bf_scaffold_317_curated_9
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8349..9317
DNA (969bp) protein (323aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J750_POLGS
Conjugal transfer protein TrbB {ECO:0000313|EMBL:BAR63384.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_300_bf_scaffold_317_curated_10
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9307..9696
DNA (390bp) protein (130aa)
Putative conjugal transfer protein TrbC n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M980_RHIL3
Conjugal transfer protein TrbC {ECO:0000313|EMBL:BAR63385.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
trbC; putative conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_cont_300_bf_scaffold_317_curated_11
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9689..9988
DNA (300bp) protein (100aa)
Conjugal transfer protein n=2 Tax=Agrobacterium tumefaciens complex RepID=Q7D2P3_AGRT5
Conjugal transfer protein TrbD {ECO:0000313|EMBL:BAR63386.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
trbD; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_cont_300_bf_scaffold_317_curated_12
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9997..12456
DNA (2460bp) protein (820aa)
Conjugal transfer protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JPG6_AGRRK
Conjugal transfer protein TrbE {ECO:0000313|EMBL:BAR63387.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
trbE; conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_cont_300_bf_scaffold_317_curated_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12422..13237
DNA (816bp) protein (272aa)
Conjugal transfer protein TrbJ n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF57_NITHX
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:BAR63388.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
conjugal transfer protein TrbJ
SCNpilot_cont_300_bf_scaffold_317_curated_14
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13231..13407
DNA (177bp) protein (59aa)
Entry-exclusion protein {ECO:0000313|EMBL:BAR63389.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_300_bf_scaffold_317_curated_15
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13401..14576
DNA (1176bp) protein (392aa)
conjugal transfer protein TrbL n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000376D2FF
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KGE79708.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
trbL; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_300_bf_scaffold_317_curated_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14573..15256
DNA (684bp) protein (228aa)
conjugal transfer protein TrbF n=1 Tax=Rhizobium giardinii RepID=UPI00037644FB
Conjugal transfer protein TrbF {ECO:0000313|EMBL:BAR63391.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
trbF; conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_300_bf_scaffold_317_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15274..16104
DNA (831bp) protein (277aa)
Conjugal transfer protein TrbG n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B930_RHIRD
Conjugative transfer protein TrbG {ECO:0000313|EMBL:AHK05237.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
trbG; conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_300_bf_scaffold_317_curated_18
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16109..16570
DNA (462bp) protein (154aa)
Conjugal transfer protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J741_POLGS
Conjugal transfer protein TrbH {ECO:0000313|EMBL:BAR63393.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
Conjugal transfer protein
SCNpilot_cont_300_bf_scaffold_317_curated_19
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16582..17886
DNA (1305bp) protein (435aa)
Conjugal transfer protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K480_AGRVS
Conjugal transfer protein TrbI {ECO:0000313|EMBL:BAR63394.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
trbI; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
SCNpilot_cont_300_bf_scaffold_317_curated_20
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18004..18639
DNA (636bp) protein (212aa)
Two component transcriptional regulator, LuxR family n=2 Tax=Burkholderia RepID=A4JJ97_BURVG
two component LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:KEA55082.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
SCNpilot_cont_300_bf_scaffold_317_curated_21
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18650..20437)
DNA (1788bp) protein (596aa)
Integral membrane sensor hybrid histidine kinase n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JJ96_BURVG
integral membrane sensor hybrid histidine kinase
Integral membrane sensor hybrid histidine kinase {ECO:0000313|EMBL:ABO56349.1}; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia; cepacia (strain R1808)).;"
SCNpilot_cont_300_bf_scaffold_317_curated_22
unknown

Not on your lists

comp(20713..20802)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_317_curated_23
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21581..22138
DNA (558bp) protein (186aa)
flagellar motor protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B594D8
Flagellar motor component {ECO:0000313|EMBL:EIC23188.1}; Flags: Precursor;; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_317_curated_24
unknown

Not on your lists

22135..23919
DNA (1785bp) protein (595aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_317_curated_25
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23928..26351
DNA (2424bp) protein (808aa)
mucD; periplasmic protease; K01362 [EC:3.4.21.-]
Periplasmic serine protease, Do/DeqQ family n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BD39_9XANT
Periplasmic serine protease, Do/DeqQ family {ECO:0000313|EMBL:EGD09641.1}; Flags: Precursor;; TaxID=925775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria ATCC 35937.;"
SCNpilot_cont_300_bf_scaffold_317_curated_26
unknown

Not on your lists

comp(26360..27565)
DNA (1206bp) protein (402aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_317_curated_27
unknown

Not on your lists

comp(27767..28864)
DNA (1098bp) protein (366aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_317_curated_28
unknown

Not on your lists

comp(29001..29567)
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_317_curated_29
unknown

Not on your lists

comp(29597..30058)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_317_curated_30
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30062..32416)
DNA (2355bp) protein (785aa)
hypothetical protein BIP-1p35 n=1 Tax=Bordetella phage BIP-1 RepID=UPI000034ED1D
S-antigen family protein
S-antigen family protein {ECO:0000313|EMBL:ACI52230.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
Displaying items 1-30 of 74 in total

View Taxonomy