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SCNpilot_cont_300_bf_scaffold_530_curated

Search features with annotation key words

Displaying items 1-30 of 128 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_530_curated_1
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(160..1386)
DNA (1227bp) protein (409aa)
MFS transporter n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA769
major facilitator transporter
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
SCNpilot_cont_300_bf_scaffold_530_curated_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2008..3600
DNA (1593bp) protein (531aa)
beta-phosphoglucomutase; K01838 beta-phosphoglucomutase [EC:5.4.2.6]
glycosyl hydrolase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9C51
Uncharacterized protein {ECO:0000313|EMBL:GAO56473.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_cont_300_bf_scaffold_530_curated_3
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3603..4256
DNA (654bp) protein (218aa)
beta-phosphoglucomutase; K01838 beta-phosphoglucomutase [EC:5.4.2.6]
beta-phosphoglucomutase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9C50
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_cont_300_bf_scaffold_530_curated_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4289..5302)
DNA (1014bp) protein (338aa)
LacI family transcription regulator n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA766
Transcriptional regulator of maltose utilization of lacI family {ECO:0000313|EMBL:GAO56471.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cebR; LacI family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_530_curated_5
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5873..7894
DNA (2022bp) protein (674aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9C4E
Outer membrane receptor protein {ECO:0000313|EMBL:EJL38064.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
TonB-dependent receptor plug
SCNpilot_cont_300_bf_scaffold_530_curated_6
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8034..8492
DNA (459bp) protein (153aa)
integrase n=1 Tax=Sphingomonas melonis RepID=UPI0003807B92
Integrase {ECO:0000313|EMBL:KHA65450.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
transposase
SCNpilot_cont_300_bf_scaffold_530_curated_7
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8513..9271
DNA (759bp) protein (253aa)
IclR family transcriptional regulator n=1 Tax=Mycobacterium fortuitum subsp. fortuitum DSM 46621 RepID=K0UZT6_MYCFO
IclR family transcriptional regulator {ECO:0000313|EMBL:AIA00753.1}; TaxID=68570 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albulus.;"
IclR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_530_curated_8
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9291..10487)
DNA (1197bp) protein (399aa)
Predicted acyl-CoA transferase/carnitine dehydratase n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RVP3_BLASD
CAIB/BAIF family protein {ECO:0000313|EMBL:CDO59619.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
acyl-CoA transferase/carnitine dehydratase
SCNpilot_cont_300_bf_scaffold_530_curated_9
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10526..11293)
DNA (768bp) protein (256aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:CDO59618.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CDO59618.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Caulobacter sp. AP07 RepID=J3AF96_9CAUL
enoyl-CoA hydratase/isomerase
SCNpilot_cont_300_bf_scaffold_530_curated_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11446..14286
DNA (2841bp) protein (947aa)
Outer membrane cobalamin receptor protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H462_9CAUL
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:EJL37620.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_530_curated_11
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14411..15751
DNA (1341bp) protein (447aa)
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VFJ2_CAUST
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG09724.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_530_curated_12
unknown

Not on your lists

15871..16020
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_530_curated_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16070..16540)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NE74_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE51968.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
DoxX family protein; K15977 putative oxidoreductase
SCNpilot_cont_300_bf_scaffold_530_curated_14
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16598..16780)
DNA (183bp) protein (61aa)
UPI0003D66B0C related cluster n=1 Tax=unknown RepID=UPI0003D66B0C
Membrane protein {ECO:0000313|EMBL:ETI65669.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_530_curated_15
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17089..17628
DNA (540bp) protein (180aa)
UPI0003D5F25A related cluster n=1 Tax=unknown RepID=UPI0003D5F25A
RNA polymerase sigma70 {ECO:0000313|EMBL:ETI65670.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_530_curated_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17625..18266
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NE71_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE51971.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_530_curated_17
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18371..18634
DNA (264bp) protein (88aa)
UPI0003D5BBAF related cluster n=1 Tax=unknown RepID=UPI0003D5BBAF
Uncharacterized protein {ECO:0000313|EMBL:ETI65672.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_530_curated_18
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18692..19525
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002EEDFCE
UPF0276 protein NX02_01035 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein; K09930 hypothetical protein
SCNpilot_cont_300_bf_scaffold_530_curated_19
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19522..20271
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002F3FFBC
Uncharacterized protein {ECO:0000313|EMBL:AHE51974.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_530_curated_20
unknown

Not on your lists

20916..21065
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_530_curated_21
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21242..22498
DNA (1257bp) protein (419aa)
Nitrate/nitrite transporter n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZXA8_9SPHN
MFS transporter {ECO:0000313|EMBL:AJR23837.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
major facilitator superfamily protein
SCNpilot_cont_300_bf_scaffold_530_curated_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22528..23829)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036DC99C
Aromatic hydrocarbon degradation protein {ECO:0000313|EMBL:AJP71077.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
aromatic hydrocarbon degradation membrane protein; K06076 long-chain fatty acid transport protein
SCNpilot_cont_300_bf_scaffold_530_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23880..24287)
DNA (408bp) protein (136aa)
hypothetical protein n=2 Tax=Sphingomonas melonis RepID=UPI000370DF01
Sphingomonas taxi strain 30a NODE_40, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30372.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_530_curated_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24447..26126
DNA (1680bp) protein (560aa)
AMP-binding enzyme family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WUX6_9SPHN
DNA, contig: SP611 {ECO:0000313|EMBL:GAN12600.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
AMP-dependent synthetase and ligase
SCNpilot_cont_300_bf_scaffold_530_curated_25
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26126..26530
DNA (405bp) protein (135aa)
MerR family transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCBEA
Putative MerR family transcriptional regulator {ECO:0000313|EMBL:GAL99734.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
MerR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_530_curated_26
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26539..27189
DNA (651bp) protein (217aa)
Uracil-DNA glycosylase (EC:3.2.2.-)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MN74_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW17057.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
SCNpilot_cont_300_bf_scaffold_530_curated_27
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27333..28844)
DNA (1512bp) protein (504aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase (EC:1.18.1.3)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AEI04993.1}; EC=1.18.1.3 {ECO:0000313|EMBL:AEI04993.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=2 Tax=Oligotropha carboxidovorans RepID=B6JAN3_OLICO
SCNpilot_cont_300_bf_scaffold_530_curated_28
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28935..30119)
DNA (1185bp) protein (395aa)
NAD(FAD)-utilizing dehydrogenase n=1 Tax=Sphingobium baderi LL03 RepID=T0HQ46_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO39162.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
putative flavoprotein; K07007
SCNpilot_cont_300_bf_scaffold_530_curated_29
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30123..30302)
DNA (180bp) protein (60aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631DB6
DNA, contig: SP617 {ECO:0000313|EMBL:GAN13388.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_530_curated_30
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(30391..32571)
DNA (2181bp) protein (727aa)
TonB-dependent receptor n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V569_TERSS
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor {ECO:0000313|EMBL:ADV83756.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
Displaying items 1-30 of 128 in total

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