ggKbase home page

SCNpilot_cont_300_bf_scaffold_5163_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_5163_curated_1
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..273)
DNA (273bp) protein (91aa)
ECF-type sigma factor n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z5F9_SPHJU
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:AJR22759.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_5163_curated_2
unknown

Not on your lists

comp(724..1578)
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00035F2952
SCNpilot_cont_300_bf_scaffold_5163_curated_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1615..3882)
DNA (2268bp) protein (756aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USH7_9SPHN
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:AJA09086.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_5163_curated_4
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4997..5578
DNA (582bp) protein (194aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VHM4_CAUST
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADG09005.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_5163_curated_5
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5575..6543
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0003130526
anti-FecI sigma factor FecR; K07165 transmembrane sensor
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ABQ67289.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_5163_curated_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6762..7790
DNA (1029bp) protein (343aa)
PEP-CTERM putative exosortase interaction domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYG1_9SPHN
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12249.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5163_curated_7
unknown

Not on your lists

8368..8523
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5163_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8677..8952
DNA (276bp) protein (92aa)
DNA-binding protein HU 1 n=2 Tax=Brevundimonas diminuta RepID=F4QYV5_BREDI
DNA-binding protein HU 1 {ECO:0000313|EMBL:EGF94726.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta
SCNpilot_cont_300_bf_scaffold_5163_curated_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9251..9673
DNA (423bp) protein (141aa)
Organic hydroperoxide resistance protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV06_RHITR
organic hydroperoxide resistance protein
Organic hydroperoxide resistance protein {ECO:0000313|EMBL:AGB73970.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_5163_curated_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10241..10879
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S372_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO38771.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5163_curated_11
unknown

Not on your lists

comp(11046..11273)
DNA (228bp) protein (76aa)

This feature has no annotations

Displaying 11 items

View Taxonomy