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SCNpilot_cont_300_bf_scaffold_2590_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2590_curated_1
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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215..2023
DNA (1809bp) protein (603aa)
UPI0003CEC8B1 related cluster n=1 Tax=unknown RepID=UPI0003CEC8B1
Uncharacterized protein {ECO:0000313|EMBL:ESY66841.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2590_curated_2
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2489..2737
DNA (249bp) protein (83aa)
XRE family transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B66E6D
XRE family transcriptional regulator {ECO:0000313|EMBL:KKC24266.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
XRE family transcriptional regulator; K15773 HTH-type transcriptional regulator, antitoxin HipB
SCNpilot_cont_300_bf_scaffold_2590_curated_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3212..4027
DNA (816bp) protein (272aa)
HipA domain-containing protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
toxin HipA n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6904C
Toxin-antitoxin system toxin component HipA {ECO:0000313|EMBL:GAM00353.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_2590_curated_4
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4372..5055)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B5L2_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS43744.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_cont_300_bf_scaffold_2590_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5406..6179)
DNA (774bp) protein (258aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489BDB
Dehydrogenase (Related to short-chain alcohol dehydrogenase) {ECO:0000313|EMBL:AHK05011.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
Short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_2590_curated_6
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6309..6890
DNA (582bp) protein (194aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248861B
LysR family transcriptional regulator
Putative HTH-type transcriptional regulator YhjC {ECO:0000313|EMBL:EEP88154.1}; TaxID=320390 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia mallei GB8 horse 4.;"
SCNpilot_cont_300_bf_scaffold_2590_curated_7
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6988..7194
DNA (207bp) protein (69aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000378BC83
LysR family transcriptional regulator {ECO:0000313|EMBL:KJF72569.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2590_curated_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7145..8104)
DNA (960bp) protein (320aa)
LysR family transcriptional regulator (EC:4.2.1.1)
Transcriptional regulator, LysR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4D5_9BRAD
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFI52815.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_cont_300_bf_scaffold_2590_curated_9
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8230..8640
DNA (411bp) protein (137aa)
Germin subfamily 1 member 15 n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0GXR1_9SPHN
Germin subfamily 1 member 15 {ECO:0000313|EMBL:EQB08766.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
cupin
SCNpilot_cont_300_bf_scaffold_2590_curated_10
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8907..9284
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036DAC90
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH49523.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_2590_curated_11
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9348..11639
DNA (2292bp) protein (764aa)
Outer membrane receptor protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G0H6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KKC26921.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_2590_curated_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11636..12979
DNA (1344bp) protein (448aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036AE7E3
Sphingomonas taxi strain 30a NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30210.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
PepSY-associated TM helix domain-containing protein
SCNpilot_cont_300_bf_scaffold_2590_curated_13
unknown

Not on your lists

comp(13021..13215)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2590_curated_14
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13296..13667)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H0E0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB06467.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
response regulator receiver
SCNpilot_cont_300_bf_scaffold_2590_curated_15
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13660..16491)
DNA (2832bp) protein (944aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H2Z4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB06468.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
sensor histidine kinase
SCNpilot_cont_300_bf_scaffold_2590_curated_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16721..17098)
DNA (378bp) protein (126aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
GMP synthase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003777E23
hypothetical protein
Displaying 16 items

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