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SCNpilot_cont_300_bf_scaffold_1403_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1403_curated_1
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

219..821
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E7K5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM38891.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
SCNpilot_cont_300_bf_scaffold_1403_curated_2
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

872..2755
DNA (1884bp) protein (628aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A37862
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ACL60243.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_300_bf_scaffold_1403_curated_3
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2755..3609
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631653
hypothetical protein
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_cont_300_bf_scaffold_1403_curated_4
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3864..5084)
DNA (1221bp) protein (407aa)
integrase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DF6C8E
Putative recombinase {ECO:0000313|EMBL:GAM00355.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
symbiosis island integrase
SCNpilot_cont_300_bf_scaffold_1403_curated_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5455..6702
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC613
Uncharacterized protein {ECO:0000313|EMBL:AJP70754.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1403_curated_6
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6810..11432
DNA (4623bp) protein (1541aa)
NAD-specific glutamate dehydrogenase (EC:1.4.1.2); K15371 glutamate dehydrogenase [EC:1.4.1.2]
glutamate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B32230
Putative NAD-specific glutamate dehydrogenase {ECO:0000313|EMBL:GAM00357.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_1403_curated_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11500..12039)
DNA (540bp) protein (180aa)
DNA-binding protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000361A9AE
DNA, contig: SP626 {ECO:0000313|EMBL:GAN13757.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ferritin Dps family protein; K04047 starvation-inducible DNA-binding protein
SCNpilot_cont_300_bf_scaffold_1403_curated_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12061..12618)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036BF1A1
Uncharacterized protein {ECO:0000313|EMBL:AIT06328.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1403_curated_9
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12649..12954)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003734D7F
Uncharacterized protein {ECO:0000313|EMBL:KHA63873.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_300_bf_scaffold_1403_curated_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13120..13287
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Sphingomonas sp. S17 RepID=F3X388_9SPHN
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
SCNpilot_cont_300_bf_scaffold_1403_curated_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13440..13802)
DNA (363bp) protein (121aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas melonis RepID=UPI000374468F
Sphingomonas taxi strain 30a NODE_22, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27345.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
response regulator receiver protein
SCNpilot_cont_300_bf_scaffold_1403_curated_12
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13840..14112
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SHS0_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50132.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_1403_curated_13
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14109..14738
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3E792
Uncharacterized protein {ECO:0000313|EMBL:EZP51739.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1403_curated_14
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14901..15380
DNA (480bp) protein (160aa)
endoribonuclease n=1 Tax=Sphingomonas melonis RepID=UPI00036815A3
Endoribonuclease {ECO:0000313|EMBL:KHA63867.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
endoribonuclease L-PSP
SCNpilot_cont_300_bf_scaffold_1403_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16167..16544
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037B6B39
Uncharacterized protein {ECO:0000313|EMBL:AJP73223.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1403_curated_16
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16531..18225)
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037EFADD
Putative membrane protein {ECO:0000313|EMBL:EZP51742.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1403_curated_17
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18312..19820)
DNA (1509bp) protein (503aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F3D65B
Uncharacterized protein {ECO:0000313|EMBL:GAO40891.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1403_curated_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19820..21550)
DNA (1731bp) protein (577aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC92B
Putative membrane protein {ECO:0000313|EMBL:EZP51743.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1403_curated_19
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21585..22829)
DNA (1245bp) protein (415aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
argG; argininosuccinate synthase; K01940 argininosuccinate synthase [EC:6.3.4.5]
argininosuccinate synthase n=1 Tax=Sphingomonas melonis RepID=UPI0003621903
SCNpilot_cont_300_bf_scaffold_1403_curated_20
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22840..24081)
DNA (1242bp) protein (414aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYU6_9SPHN
Putative cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:GAM00413.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_1403_curated_21
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24148..24474)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036677E6
Putative oxidoreductase {ECO:0000313|EMBL:GAM00412.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
putative oxidoreductase; K07147
SCNpilot_cont_300_bf_scaffold_1403_curated_22
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24841..25548)
DNA (708bp) protein (236aa)
HupC n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7A35F
Uncharacterized protein {ECO:0000313|EMBL:GAM00411.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
putative cytochrome B561
SCNpilot_cont_300_bf_scaffold_1403_curated_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25615..26376)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003640045
Membrane protein {ECO:0000313|EMBL:AJP73230.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K07090
SCNpilot_cont_300_bf_scaffold_1403_curated_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26373..27011)
DNA (639bp) protein (213aa)
cytochrome C biogenesis protein CcmB n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003629EC9
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cytochrome c-type biogenesis protein CcmB; K02194 heme exporter protein B
SCNpilot_cont_300_bf_scaffold_1403_curated_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27008..27535)
DNA (528bp) protein (176aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
heme exporter protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
cytochrome C biogenesis protein CcmA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003005278
SCNpilot_cont_300_bf_scaffold_1403_curated_26
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27583..27993)
DNA (411bp) protein (137aa)
Neutral zinc metallopeptidase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4861F
DNA, contig: SP657 {ECO:0000313|EMBL:GAN15385.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1403_curated_27
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28042..28335
DNA (294bp) protein (98aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B44C1F
SCNpilot_cont_300_bf_scaffold_1403_curated_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28452..29231)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037961DE
Short-chain dehydrogenase {ECO:0000313|EMBL:AJP73116.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
short chain dehydrogenase
SCNpilot_cont_300_bf_scaffold_1403_curated_29
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29495..30019)
DNA (525bp) protein (175aa)
peptidoglycan-binding protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B65A41
Membrane protein {ECO:0000313|EMBL:KHA62939.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
peptidoglycan-associated lipoprotein
SCNpilot_cont_300_bf_scaffold_1403_curated_30
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30067..30333)
DNA (267bp) protein (89aa)
translocation protein TolB n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7849E
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
tolB; translocation protein TolB; K03641 TolB protein
Displaying 30 items

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