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SCNpilot_cont_300_bf_scaffold_3376_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3376_curated_1
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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412..765
DNA (354bp) protein (118aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NE94_9SPHN
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
fliE; flagellar hook-basal body protein FliE; K02408 flagellar hook-basal body complex protein FliE
SCNpilot_cont_300_bf_scaffold_3376_curated_2
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1393..2217)
DNA (825bp) protein (275aa)
Methyltransferase type 11 n=1 Tax=Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703) RepID=F0RPP6_DEIPM
Methyltransferase {ECO:0000313|EMBL:EWY37557.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Methyltransferase type 11
SCNpilot_cont_300_bf_scaffold_3376_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2258..2572)
DNA (315bp) protein (105aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR80495.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_300_bf_scaffold_3376_curated_4
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4632..5516
DNA (885bp) protein (295aa)
TonB-dependent receptor, plug n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQE7_SPHAL
TonB-dependent receptor, plug; K02014 iron complex outermembrane recepter protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_3376_curated_5
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5513..6427)
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=2 Tax=Sphingopyxis RepID=Q1GQE8_SPHAL
LysR family transcriptional regulator
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_3376_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6663..7889
DNA (1227bp) protein (409aa)
cystathionine beta-lyase; K01760 cystathionine beta-lyase [EC:4.4.1.8]
Cystathionine beta-lyase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQW5_9SPHN
Cystathionine beta-lyase {ECO:0000313|EMBL:ENY80860.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_300_bf_scaffold_3376_curated_7
bacterium YEK0313, Bacteria

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7939..9147
DNA (1209bp) protein (403aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01733 threonine synthase [EC:4.2.3.1]
pyridoxal-5''''-phosphate-dependent protein subunit beta n=1 Tax=Bacillus oceanisediminis RepID=UPI0002D6053B
Threonine synthase {ECO:0000313|EMBL:CEJ11721.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_300_bf_scaffold_3376_curated_8
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9144..10505
DNA (1362bp) protein (454aa)
Amino acid/polyamine/organocation transporter, APC superfamily n=2 Tax=Congregibacter RepID=A4A478_9GAMM
Amino acid permease {ECO:0000313|EMBL:EXS70679.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
amino acid permease-associated protein
SCNpilot_cont_300_bf_scaffold_3376_curated_9
unknown

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11275..11379
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 9 items

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