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SCNpilot_cont_300_bf_scaffold_1298_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1298_curated_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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245..706
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=T0H0B0_9SPHN
Putative small heat shock protein {ECO:0000313|EMBL:GAM01377.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
heat shock protein Hsp20; K13993 HSP20 family protein
SCNpilot_cont_300_bf_scaffold_1298_curated_2
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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737..1744
DNA (1008bp) protein (336aa)
alcohol dehydrogenase (EC:1.1.1.1); K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
Alcohol dehydrogenase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECE0_9SPHN
Alcohol dehydrogenase {ECO:0000313|EMBL:EHJ61075.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_cont_300_bf_scaffold_1298_curated_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2174..2395
DNA (222bp) protein (74aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM01375.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_1298_curated_4
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2415..4793
DNA (2379bp) protein (793aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
xfp; phosphoketolase (EC:4.1.2.22); K01632 fructose-6-phosphate phosphoketolase [EC:4.1.2.22]
Probable phosphoketolase n=1 Tax=Rhizobium sp. CF080 RepID=J3CK31_9RHIZ
SCNpilot_cont_300_bf_scaffold_1298_curated_5
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4775..6082
DNA (1308bp) protein (436aa)
glycosidase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028A1998
Uncharacterized protein {ECO:0000313|EMBL:GAM01372.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1298_curated_6
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6165..7001)
DNA (837bp) protein (279aa)
Universal stress protein Usp n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLC8_9GAMM
Universal stress protein Usp {ECO:0000313|EMBL:EAR23116.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
universal stress family protein
SCNpilot_cont_300_bf_scaffold_1298_curated_7
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7436..7909)
DNA (474bp) protein (158aa)
NTP pyrophosphohydrolase n=1 Tax=Sphingomonas wittichii RepID=UPI00035DF77A
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ABQ70769.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_1298_curated_8
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8119..8715
DNA (597bp) protein (199aa)
Scaffold32, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30181.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCNpilot_cont_300_bf_scaffold_1298_curated_9
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8687..9340
DNA (654bp) protein (218aa)
OsmY domain-containing protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A1E89C
Uncharacterized protein {ECO:0000313|EMBL:AHE53579.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
transport-associated protein
SCNpilot_cont_300_bf_scaffold_1298_curated_10
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9499..10530
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B326BA
Scaffold32, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30184.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1298_curated_11
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10650..12617
DNA (1968bp) protein (656aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
multi-sensor signal transduction histidine kinase; K14986 two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
histidine kinase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B444F4
SCNpilot_cont_300_bf_scaffold_1298_curated_12
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12664..13239
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HX70_9SPHN
FixJ protein {ECO:0000313|EMBL:KIS30186.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
NarL family two-component system response regulator; K14987 two-component system, LuxR family, response regulator FixJ
SCNpilot_cont_300_bf_scaffold_1298_curated_13
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13310..13714
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI00037CC842
response regulator receiver protein
Uncharacterized protein {ECO:0000313|EMBL:EPR11330.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_cont_300_bf_scaffold_1298_curated_14
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13720..14310)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00037CD596
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:ACL62978.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Displaying 14 items

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