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SCNpilot_cont_300_bf_scaffold_1115_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1115_curated_1
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..314)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C653
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI98015.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_cont_300_bf_scaffold_1115_curated_2
unknown

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858..2294
DNA (1437bp) protein (479aa)
hypothetical protein SMAC_11600, partial n=1 Tax=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) RepID=UPI0001BF5F8C
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1115_curated_3
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2355..3848
DNA (1494bp) protein (498aa)
conjugal transfer protein TraD n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C651
Uncharacterized protein {ECO:0000313|EMBL:EZP84325.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1115_curated_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3850..4122
DNA (273bp) protein (91aa)
Conjugal transfer TraD n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MRF2_9SPHN
Conjugal transfer protein TraD {ECO:0000313|EMBL:KFD26334.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
conjugal transfer protein TraD
SCNpilot_cont_300_bf_scaffold_1115_curated_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4093..4374)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002FEF5FF
RNA polymerase sigma factor {ECO:0000313|EMBL:AJP74147.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_1115_curated_6
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4361..4993)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036D7FEE
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABF54304.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_cont_300_bf_scaffold_1115_curated_7
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4990..5484)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HWZ1_9SPHN
Putative nucleotidyltransferase {ECO:0000313|EMBL:KGB55017.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1115_curated_8
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5704..6630)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J3U9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA11275.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1115_curated_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7008..8264)
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J3AUD4_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL37559.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1115_curated_10
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8274..9071)
DNA (798bp) protein (266aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-]
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036411E2
TatD-related deoxyribonuclease {ECO:0000313|EMBL:ACB28067.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_cont_300_bf_scaffold_1115_curated_11
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9062..10324)
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003803CC2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI66604.1}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_cont_300_bf_scaffold_1115_curated_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10318..11100)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003725C31
Uncharacterized protein {ECO:0000313|EMBL:ELC14974.1}; TaxID=1169330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE10.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1115_curated_13
Xenorhabdus szentirmaii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11101..12864)
DNA (1764bp) protein (588aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C0DE3
Uncharacterized protein {ECO:0000313|EMBL:CDL83617.1}; TaxID=1427518 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus szentirmaii DSM 16338.;"
KAP P-loop domain-containing protein
SCNpilot_cont_300_bf_scaffold_1115_curated_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13474..13869
DNA (396bp) protein (132aa)
DNA-binding protein, putative n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NAC4_9SPHN
Putative DNA-binding protein {ECO:0000313|EMBL:KEZ16873.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
putative transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1115_curated_15
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13737..14972)
DNA (1236bp) protein (412aa)
integrase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BDE6
Putative integrase {ECO:0000313|EMBL:AJA11169.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
putative integrase
SCNpilot_cont_300_bf_scaffold_1115_curated_16
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15261..16082)
DNA (822bp) protein (274aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV39_9GAMM
LysR family transcriptional regulator
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_cont_300_bf_scaffold_1115_curated_17
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16115..16882)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364E3A2
sodium-dependent carbohydrate permease
Tax=BJP_IG2102_Porphyrobacter_62_18
Displaying 17 items

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