ggKbase home page

SCNpilot_cont_300_bf_scaffold_1590_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1590_curated_1
unknown

Not on your lists

comp(3..80)
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1590_curated_2
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93..1190)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HSF0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02250.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
putative dibenzothiophene desulfurization enzyme B
SCNpilot_cont_300_bf_scaffold_1590_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1352..2491)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GET0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJP74158.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative sigma-54 specific transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1590_curated_4
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2576..3586)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GDS8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB01911.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
monooxygenase
SCNpilot_cont_300_bf_scaffold_1590_curated_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3897..5030
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GQI7_9SPHN
Nitrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJP74159.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
SCNpilot_cont_300_bf_scaffold_1590_curated_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5027..5779
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HWJ2_9SPHN
ABC transporter permease {ECO:0000313|EMBL:AJP74160.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
binding-protein-dependent transport system inner membrane protein
SCNpilot_cont_300_bf_scaffold_1590_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5776..6555
DNA (780bp) protein (260aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S4A5_9SPHN
ABC transporter permease {ECO:0000313|EMBL:AJP70666.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
binding-protein-dependent transport systems inner membrane component
SCNpilot_cont_300_bf_scaffold_1590_curated_8
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6565..7413
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GMK8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB01907.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
ABC transporter ATP-binding protein
SCNpilot_cont_300_bf_scaffold_1590_curated_9
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7410..8018
DNA (609bp) protein (203aa)
Nitroreductase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SJW9_9SPHN
nitroreductase
Nitroreductase {ECO:0000313|EMBL:AGH50877.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_1590_curated_10
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8015..8977
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GQJ3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJR25013.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1590_curated_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8992..10149
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HWI7_9SPHN
Alkanesulfonate monooxygenase {ECO:0000313|EMBL:AJP70667.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
alkanesulfonate monooxygenase
SCNpilot_cont_300_bf_scaffold_1590_curated_12
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10236..12572)
DNA (2337bp) protein (779aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S4B0_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:AGH50880.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_1590_curated_13
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12782..13069)
DNA (288bp) protein (96aa)
idnO; gluconate 5-dehydrogenase (EC:1.1.1.69); K00046 gluconate 5-dehydrogenase [EC:1.1.1.69]
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GNM7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL31880.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_cont_300_bf_scaffold_1590_curated_14
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13571..14179)
DNA (609bp) protein (203aa)
3-beta hydroxysteroid dehydrogenase n=1 Tax=alpha proteobacterium L41A RepID=UPI00037399F6
3-beta hydroxysteroid dehydrogenase {ECO:0000313|EMBL:KIC54999.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
TrkA-N; K07118
SCNpilot_cont_300_bf_scaffold_1590_curated_15
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14232..14645
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI000368E4A1
HxlR family transcriptional regulator {ECO:0000313|EMBL:KIC55000.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1590_curated_16
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14679..17447)
DNA (2769bp) protein (923aa)
UPI0003D5DB82 related cluster n=1 Tax=unknown RepID=UPI0003D5DB82
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:ETI58617.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
TonB-dependent receptor plug
SCNpilot_cont_300_bf_scaffold_1590_curated_17
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17521..18495)
DNA (975bp) protein (325aa)
UPI0003D67A3F related cluster n=1 Tax=unknown RepID=UPI0003D67A3F
Anti-FecI sigma factor FecR {ECO:0000313|EMBL:ETI58616.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor
SCNpilot_cont_300_bf_scaffold_1590_curated_18
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18462..19040)
DNA (579bp) protein (193aa)
UPI0003D629C2 related cluster n=1 Tax=unknown RepID=UPI0003D629C2
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:ETI58615.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_1590_curated_19
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19329..20759
DNA (1431bp) protein (477aa)
UPI0003D67794 related cluster n=1 Tax=unknown RepID=UPI0003D67794
TonB-denpendent receptor {ECO:0000313|EMBL:ETI58614.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
TonB-dependent receptor plug
Displaying 19 items

View Taxonomy