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SCNpilot_cont_300_bf_scaffold_645_curated

Search features with annotation key words

Displaying items 1-30 of 137 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_645_curated_1
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1574
DNA (1572bp) protein (524aa)
ABC transporter related protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S527_9SPHN
ABC transporter related protein
Uncharacterized protein {ECO:0000313|EMBL:EQB02246.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
SCNpilot_cont_300_bf_scaffold_645_curated_2
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1576..3399
DNA (1824bp) protein (608aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GPL0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB01918.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
ABC transporter ATP-binding protein
SCNpilot_cont_300_bf_scaffold_645_curated_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3423..4373)
DNA (951bp) protein (317aa)
serine acetyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002630D1F
Serine O-acetyltransferase {ECO:0000313|EMBL:EZP56707.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
Serine O-acetyltransferase
SCNpilot_cont_300_bf_scaffold_645_curated_4
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4529..6070)
DNA (1542bp) protein (514aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Novosphingobium sp. AP12 RepID=J2H0W4_9SPHN
Scaffold21, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30607.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_645_curated_5
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6099..7559)
DNA (1461bp) protein (487aa)
Amidohydrolase n=1 Tax=Novosphingobium sp. AP12 RepID=J2GV76_9SPHN
Amidohydrolase {ECO:0000313|EMBL:EJL34355.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
amidohydrolase
SCNpilot_cont_300_bf_scaffold_645_curated_6
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7590..8540)
DNA (951bp) protein (317aa)
Outer membrane receptor for ferrienterochelin and colicin n=1 Tax=Novosphingobium sp. AP12 RepID=J3ANZ9_9SPHN
Outer membrane receptor for ferrienterochelin and colicin {ECO:0000313|EMBL:EJL34354.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_645_curated_7
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8552..9772)
DNA (1221bp) protein (407aa)
Outer membrane receptor for ferrienterochelin and colicin n=1 Tax=Novosphingobium sp. AP12 RepID=J3ANZ9_9SPHN
Outer membrane receptor for ferrienterochelin and colicin {ECO:0000313|EMBL:EJL34354.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_645_curated_8
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10038..11306
DNA (1269bp) protein (423aa)
ssuD; alkanesulfonate monooxygenase (EC:1.14.14.5)
SsuD family monooxygenase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HH06_9SPHN
SsuD family monooxygenase {ECO:0000313|EMBL:EQA98684.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
SCNpilot_cont_300_bf_scaffold_645_curated_9
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11323..12591
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HM88_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA98683.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
type 2 acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_645_curated_10
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12798..15407
DNA (2610bp) protein (870aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GF48_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA98687.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
outer membrane receptor protein rbh
SCNpilot_cont_300_bf_scaffold_645_curated_11
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15434..16630
DNA (1197bp) protein (399aa)
alkanesulfonate monooxygenase (EC:1.14.14.5); K04091 alkanesulfonate monooxygenase [EC:1.14.14.5]
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HM94_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA98688.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
SCNpilot_cont_300_bf_scaffold_645_curated_12
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16725..18008
DNA (1284bp) protein (428aa)
ssuD3; alkanesulfonate monooxygenase SsuD (EC:1.14.14.5)
Flavin-dependent oxidoreductase, methylene-tetrahydromethanopterin reductase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AA98_9SPHN
Scaffold21, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30604.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCNpilot_cont_300_bf_scaffold_645_curated_13
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18005..19558
DNA (1554bp) protein (518aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GDC9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA98681.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_645_curated_14
unknown

Not on your lists

comp(19845..20105)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_645_curated_15
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20138..20599
DNA (462bp) protein (154aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Novosphingobium sp. AP12 RepID=J2PMS6_9SPHN
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EJL28907.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
peptide ABC transporter membrane protein; K02033 peptide/nickel transport system permease protein
SCNpilot_cont_300_bf_scaffold_645_curated_16
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20599..21438
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HH00_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA98679.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
putative dipeptide transport protein (ABC superfamily, membrane); K02034 peptide/nickel transport system permease protein
SCNpilot_cont_300_bf_scaffold_645_curated_17
Pseudomonas sp. CF161, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21438..23228
DNA (1791bp) protein (597aa)
Peptide ABC transporter, ATP-binding protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6K4N3_9PSED
Peptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EPL07023.1}; TaxID=911241 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CF161.;"
putative peptide ABC transporter ATP-binding protein
SCNpilot_cont_300_bf_scaffold_645_curated_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23870..25228
DNA (1359bp) protein (453aa)
Pyridine nucleotide-disulfide oxidoreductase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WUW3_9SPHN
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KHA65246.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_645_curated_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25248..25982)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HK86_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA97998.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_645_curated_20
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26109..27251)
DNA (1143bp) protein (381aa)
Transcription regulator protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IPT4_HERSS
transcription regulator protein
Transcription regulator protein {ECO:0000313|EMBL:ADJ64981.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
SCNpilot_cont_300_bf_scaffold_645_curated_21
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27342..28313
DNA (972bp) protein (324aa)
AraC family transcription regulator protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IPT5_HERSS
AraC family transcriptional regulator
AraC family transcription regulator protein {ECO:0000313|EMBL:ADJ64982.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
SCNpilot_cont_300_bf_scaffold_645_curated_22
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28406..28900
DNA (495bp) protein (165aa)
AsnC family transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B72109
AsnC-family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:EQB01859.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
SCNpilot_cont_300_bf_scaffold_645_curated_23
Sphingomonas sp. BHC-A, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29219..32284
DNA (3066bp) protein (1022aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B75E07
TonB-dependent receptor {ECO:0000313|EMBL:KEY98058.1}; TaxID=322611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. BHC-A.;"
TonB-dependent receptor-like protein
SCNpilot_cont_300_bf_scaffold_645_curated_24
Sphingomonas sp. BHC-A, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32303..33880
DNA (1578bp) protein (526aa)
Amidohydrolase n=2 Tax=Sphingobium RepID=T0GDP3_9SPHN
putative amidohydrolase; K12941 aminobenzoyl-glutamate utilization protein B
Amidohydrolase {ECO:0000313|EMBL:KEY98059.1}; TaxID=322611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. BHC-A.;"
SCNpilot_cont_300_bf_scaffold_645_curated_25
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33944..34510)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000365E77F
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:GAD24889.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
mechanosensitive ion channel protein
SCNpilot_cont_300_bf_scaffold_645_curated_26
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34507..35319)
DNA (813bp) protein (271aa)
Protein FdhD homolog n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GWR0_SPHAL
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
formate dehydrogenase family accessory protein FdhD; K02379 FdhD protein
SCNpilot_cont_300_bf_scaffold_645_curated_27
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35693..37090
DNA (1398bp) protein (466aa)
Two-component response regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP38_AGRRK
two-component response regulator protein
Putative two-component response regulator {ECO:0000313|EMBL:GAJ93462.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_300_bf_scaffold_645_curated_28
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37107..37325
DNA (219bp) protein (73aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035C11FB
two-component sensor histidine kinase/response regulator hybrid protein
SCNpilot_cont_300_bf_scaffold_645_curated_29
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37344..39152
DNA (1809bp) protein (603aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
Two-component sensor histidine kinase/response regulator hybrid protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N8N3_9RHIZ
two-component sensor histidine kinase/response regulator hybrid protein
SCNpilot_cont_300_bf_scaffold_645_curated_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39313..41223
DNA (1911bp) protein (637aa)
Chaperone protein DnaK n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP34_AGRRK
dnaK; chaperone protein (Heat shock protein 70); K04043 molecular chaperone DnaK
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
Displaying items 1-30 of 137 in total

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