ggKbase home page

SCNpilot_cont_300_bf_scaffold_1193_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1193_curated_1
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(384..1697)
DNA (1314bp) protein (438aa)
ABC transporter related n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V2X6_SPHWW
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ABQ66642.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_1193_curated_2
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1715..3463)
DNA (1749bp) protein (583aa)
sulfonate ABC transporter permease n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB957
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABQ66641.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_1193_curated_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4113..5087
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030BE34A
Phosphatase {ECO:0000313|EMBL:AIT07289.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1193_curated_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5332..7188)
DNA (1857bp) protein (619aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
nrdA; ribonucleoside-diphosphate reductase alpha chain (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase n=1 Tax=Sphingomonas sp. S17 RepID=F3WTL9_9SPHN
SCNpilot_cont_300_bf_scaffold_1193_curated_5
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7708..10359)
DNA (2652bp) protein (884aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003781313
Sensory box protein {ECO:0000313|EMBL:EZP55551.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_cont_300_bf_scaffold_1193_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10590..12770
DNA (2181bp) protein (727aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ribonuclease R n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B412E9
ribonuclease R
SCNpilot_cont_300_bf_scaffold_1193_curated_7
unknown

Not on your lists

12772..13080
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037E0C2E
SCNpilot_cont_300_bf_scaffold_1193_curated_8
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13112..14275)
DNA (1164bp) protein (388aa)
saccharopine dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI00037AB458
Saccharopine dehydrogenase {ECO:0000313|EMBL:KHA64452.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1193_curated_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14332..16125)
DNA (1794bp) protein (598aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036359D5
ABC transporter {ECO:0000313|EMBL:AIT06162.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
lipid ABC transporter ATPase/inner membrane protein
SCNpilot_cont_300_bf_scaffold_1193_curated_10
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16494..17711
DNA (1218bp) protein (406aa)
polyhydroxyalkanoate depolymerase; K05973 poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
intracellular PHB depolymerase n=1 Tax=Sphingomonas melonis RepID=UPI00036A7B30
Putative polyhydroxyalkanoate depolymerase {ECO:0000313|EMBL:GAM00224.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_1193_curated_11
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18043..19251
DNA (1209bp) protein (403aa)
methionine gamma-lyase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5DBC7
mdeA; methionine gamma-lyase
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_cont_300_bf_scaffold_1193_curated_12
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19301..19756
DNA (456bp) protein (152aa)
AsnC family transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VVR2_9RHIZ
AsnC family transcriptional regulator {ECO:0000313|EMBL:EJZ22836.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
AsnC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1193_curated_13
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19884..20645)
DNA (762bp) protein (254aa)
ABC-2 type transporter family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WTS9_9SPHN
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein; K01992 ABC-2 type transport system permease protein
SCNpilot_cont_300_bf_scaffold_1193_curated_14
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20642..21574)
DNA (933bp) protein (311aa)
multidrug ABC transporter ATP-binding protein n=1 Tax=Sphingomonas melonis RepID=UPI0003622A6B
ABC transporter family protein {ECO:0000313|EMBL:EZP55331.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
ABC transporter; K09687 antibiotic transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_1193_curated_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21571..22293)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F3742
DSBA oxidoreductase {ECO:0000313|EMBL:AIT06170.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DsbA oxidoreductase
SCNpilot_cont_300_bf_scaffold_1193_curated_16
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22290..23642)
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000376D661
Peptidase M48 {ECO:0000313|EMBL:KHA64385.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
peptidase M48 Ste24p
SCNpilot_cont_300_bf_scaffold_1193_curated_17
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23887..26457)
DNA (2571bp) protein (857aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035D2F43
Rne/Rng family ribonuclease
SCNpilot_cont_300_bf_scaffold_1193_curated_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26918..28141
DNA (1224bp) protein (408aa)
cell wall hydrolase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037038A8
N-acetylmuramoyl-L-alanine amidase family protein {ECO:0000313|EMBL:EZP55371.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
N-acetylmuramoyl-L-alanine amidase
SCNpilot_cont_300_bf_scaffold_1193_curated_19
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28189..30705
DNA (2517bp) protein (839aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
penicillin-binding protein n=1 Tax=Sphingomonas melonis RepID=UPI0003770267
Transglycosylase family protein {ECO:0000313|EMBL:EZP55339.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_300_bf_scaffold_1193_curated_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30829..31956
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037AB835
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
peptide chain release factor 2; K02836 peptide chain release factor 2
SCNpilot_cont_300_bf_scaffold_1193_curated_21
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31953..32750
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003690D9B
Methyltransferase domain protein {ECO:0000313|EMBL:EZP55337.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
ubiquinone/menaquinone biosynthesis methyltransferase
SCNpilot_cont_300_bf_scaffold_1193_curated_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32673..33035)
DNA (363bp) protein (121aa)
DNA repair protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631A3F
DNA, contig: SP617 {ECO:0000313|EMBL:GAN13350.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
radC; DNA repair protein
SCNpilot_cont_300_bf_scaffold_1193_curated_23
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33152..34078
DNA (927bp) protein (309aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45]
thymidylate synthase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003760DD5
SCNpilot_cont_300_bf_scaffold_1193_curated_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34103..34441)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000364F6CB
Sphingomonas taxi strain 30a NODE_17, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29968.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1193_curated_25
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35001..37079
DNA (2079bp) protein (693aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
malate synthase G (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9]
Malate synthase G n=1 Tax=Sphingobium baderi LL03 RepID=T0G1S8_9SPHN
SCNpilot_cont_300_bf_scaffold_1193_curated_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37453..37926
DNA (474bp) protein (158aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
dihydrofolate reductase n=1 Tax=Sphingomonas melonis RepID=UPI000371911B
dihydrofolate reductase
SCNpilot_cont_300_bf_scaffold_1193_curated_27
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38371..39609)
DNA (1239bp) protein (413aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035FECB9
Displaying 27 items

View Taxonomy