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SCNpilot_cont_300_bf_scaffold_1198_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1198_curated_1
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..869)
DNA (867bp) protein (289aa)
epimerase n=1 Tax=Sphingomonas elodea RepID=UPI000263107D
Uncharacterized protein {ECO:0000313|EMBL:AHE57098.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_300_bf_scaffold_1198_curated_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(866..1966)
DNA (1101bp) protein (367aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000313|EMBL:AJP71341.1}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
gamma-glutamyl kinase; K00931 glutamate 5-kinase [EC:2.7.2.11]
glutamate 5-kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B79AC6
SCNpilot_cont_300_bf_scaffold_1198_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2125..2343
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Exiguobacterium sp. S17 RepID=S3GDB0_9BACL
Uncharacterized protein {ECO:0000313|EMBL:AJP72875.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_1198_curated_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2409..3128)
DNA (720bp) protein (240aa)
oxidoreductase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7A9EC
Oxidoreductase {ECO:0000313|EMBL:AIT05446.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_1198_curated_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3136..4596)
DNA (1461bp) protein (487aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphing
purF; amidophosphoribosyltransferase (EC:2.4.2.14); K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
amidophosphoribosyltransferase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000375E944
SCNpilot_cont_300_bf_scaffold_1198_curated_6
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4740..5126)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XMG7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EZP41049.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1198_curated_7
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5123..5902)
DNA (780bp) protein (260aa)
Putative methyltransferase n=1 Tax=Caulobacter sp. AP07 RepID=J2H5L2_9CAUL
Putative methyltransferase {ECO:0000313|EMBL:EJL30683.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1198_curated_8
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5978..7900
DNA (1923bp) protein (641aa)
excinuclease ABC subunit C n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6CBF8
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
uvrC; excinuclease ABC subunit C
SCNpilot_cont_300_bf_scaffold_1198_curated_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7959..10742
DNA (2784bp) protein (928aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000364E0DF
Sphingomonas taxi strain 30a NODE_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28294.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1198_curated_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10882..11829
DNA (948bp) protein (316aa)
polysaccharide deacetylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC8DE
Polysaccharide deacetylase {ECO:0000313|EMBL:AJP71062.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
polysaccharide deacetylase
SCNpilot_cont_300_bf_scaffold_1198_curated_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11826..12707
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003701817
Uncharacterized protein {ECO:0000313|EMBL:AIT06652.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1198_curated_12
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12892..13623
DNA (732bp) protein (244aa)
DNA repair protein RecO n=1 Tax=Sphingomonas elodea RepID=UPI0002630469
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
recO; DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O)
SCNpilot_cont_300_bf_scaffold_1198_curated_13
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13668..14711
DNA (1044bp) protein (348aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI00036DE76C
SCNpilot_cont_300_bf_scaffold_1198_curated_14
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14753..15550)
DNA (798bp) protein (266aa)
dolichyl-phosphate-mannose-protein mannosyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B63366
Dolichyl-phosphate-mannose-mannosyltransferase family protein {ECO:0000313|EMBL:EZP52947.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
Displaying 14 items

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