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SCNpilot_cont_300_bf_scaffold_1337_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1337_curated_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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144..992
DNA (849bp) protein (283aa)
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53]
N-carbamoylputrescine amidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031B440A
N-carbamoylputrescine amidase {ECO:0000313|EMBL:GAM02455.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_1337_curated_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1213..1908
DNA (696bp) protein (232aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B59E2C
Sphingomonas taxi strain 30a NODE_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27154.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA-binding response regulator CtrA; K13584 two-component system, cell cycle response regulator CtrA
SCNpilot_cont_300_bf_scaffold_1337_curated_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2088..3758)
DNA (1671bp) protein (557aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C79FB
Metal-dependent hydrolase {ECO:0000313|EMBL:AIT08184.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
putative hydrolase; K07047
SCNpilot_cont_300_bf_scaffold_1337_curated_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3755..4594)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035F5209
Oxidoreductase {ECO:0000313|EMBL:KHA64168.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
6-phosphogluconate dehydrogenase
SCNpilot_cont_300_bf_scaffold_1337_curated_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4686..5927
DNA (1242bp) protein (414aa)
threonine dehydratase (EC:4.3.1.19)
threonine dehydratase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003700E2F
DNA, contig: SP610 {ECO:0000313|EMBL:GAN12433.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_1337_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6262..6948
DNA (687bp) protein (229aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
putative arginyl-tRNA/protein arginylyltransferase (EC:2.3.2.8); K00685 arginine-tRNA-protein transferase [EC:2.3.2.8]
arginyl-tRNA-protein transferase n=1 Tax=Sphingomonas RepID=UPI00028A237B
SCNpilot_cont_300_bf_scaffold_1337_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6993..9014)
DNA (2022bp) protein (674aa)
thiol:disulfide interchange protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B46684
Thiol:disulfide interchange protein {ECO:0000313|EMBL:AJP72891.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
thiol-disulfide interchange protein
SCNpilot_cont_300_bf_scaffold_1337_curated_8
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9475..10668
DNA (1194bp) protein (398aa)
Alkaline phosphatase {ECO:0000256|PIRNR:PIRNR031924}; EC=3.1.3.1 {ECO:0000256|PIRNR:PIRNR031924};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381161B
alkaline phosphatase
SCNpilot_cont_300_bf_scaffold_1337_curated_9
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10718..13546)
DNA (2829bp) protein (943aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037E4A1E
Uncharacterized protein {ECO:0000313|EMBL:ESQ85702.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_1337_curated_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13632..14930
DNA (1299bp) protein (433aa)
NAD synthetase {ECO:0000313|EMBL:AIT06127.1}; EC=6.3.5.1 {ECO:0000313|EMBL:AIT06127.1};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
nadE; NAD synthetase (EC:6.3.1.5); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
NAD synthetase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F35A1
SCNpilot_cont_300_bf_scaffold_1337_curated_11
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15675..16607)
DNA (933bp) protein (311aa)
fabK; trans-2-enoyl-ACP reductase II (EC:1.3.1.9); K02371 enoyl-[acyl carrier protein] reductase II [EC:1.3.1.-]
Trans-2-enoyl-ACP reductase II n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BX33_HYPNA
2-nitropropane dioxygenase {ECO:0000313|EMBL:KJS24603.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
SCNpilot_cont_300_bf_scaffold_1337_curated_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16701..18275)
DNA (1575bp) protein (525aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
class V aminotransferase; K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2]
Glycine dehydrogenase [decarboxylating] (Glycine cleavage system P2 protein) n=1 Tax=Sphingomonas sp. S17 RepID=F3X250_9SPHN
SCNpilot_cont_300_bf_scaffold_1337_curated_13
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18272..19558)
DNA (1287bp) protein (429aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria;
glycine dehydrogenase subunit 1 (EC:1.4.4.2); K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2]
glycine dehydrogenase subunit 1 n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002889A70
SCNpilot_cont_300_bf_scaffold_1337_curated_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19714..20085)
DNA (372bp) protein (124aa)
glycine cleavage system protein H n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000380E40C
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
glycine cleavage system protein H; K02437 glycine cleavage system H protein
SCNpilot_cont_300_bf_scaffold_1337_curated_15
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20087..21241)
DNA (1155bp) protein (385aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10)
aminomethyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3933C
SCNpilot_cont_300_bf_scaffold_1337_curated_16
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21781..22317
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F2805
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein; K09748 ribosome maturation factor RimP
SCNpilot_cont_300_bf_scaffold_1337_curated_17
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22317..23939
DNA (1623bp) protein (541aa)
transcription elongation factor NusA n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B40F4B
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
nusA; transcription elongation factor NusA
SCNpilot_cont_300_bf_scaffold_1337_curated_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23939..24160
DNA (222bp) protein (74aa)
Tautomerase {ECO:0000256|RuleBase:RU362032}; EC=5.3.2.- {ECO:0000256|RuleBase:RU362032};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-]
isomerase n=1 Tax=Sphingomonas melonis RepID=UPI000363D67A
SCNpilot_cont_300_bf_scaffold_1337_curated_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24285..24596)
DNA (312bp) protein (104aa)
crossover junction endodeoxyribonuclease RuvC n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028919A9
Uncharacterized protein {ECO:0000313|EMBL:AIT07849.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
excinuclease ABC subunit C; K07461 putative endonuclease
SCNpilot_cont_300_bf_scaffold_1337_curated_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24665..25369
DNA (705bp) protein (235aa)
transcription terminating nucleic-acid-binding protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6C63D
DNA, contig: SP623 {ECO:0000313|EMBL:GAN13652.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein; K07742 hypothetical protein
SCNpilot_cont_300_bf_scaffold_1337_curated_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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25370..28090
DNA (2721bp) protein (907aa)
translation initiation factor IF-2 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5E8DC
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2
SCNpilot_cont_300_bf_scaffold_1337_curated_22
unknown

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28171..28275
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1337_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28420..28803
DNA (384bp) protein (128aa)
ribosome-binding factor A n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036C0D96
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
SCNpilot_cont_300_bf_scaffold_1337_curated_24
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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29003..29575
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PAP5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EDL49300.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
SCNpilot_cont_300_bf_scaffold_1337_curated_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29670..30260
DNA (591bp) protein (197aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
thymidine kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B64783
thymidine kinase
SCNpilot_cont_300_bf_scaffold_1337_curated_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30361..31053
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000365E5D1
Peptidase M48 {ECO:0000313|EMBL:AIT06864.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
peptidase M50
SCNpilot_cont_300_bf_scaffold_1337_curated_27
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31050..32015
DNA (966bp) protein (322aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288EFC9
SCNpilot_cont_300_bf_scaffold_1337_curated_28
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


32039..32302
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5361A
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
Displaying 28 items

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