ggKbase home page

SCNpilot_cont_300_bf_scaffold_2345_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2345_curated_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1464)
DNA (1464bp) protein (488aa)
cation transporter n=1 Tax=Sphingomonas melonis RepID=UPI000366A8ED
Sphingomonas taxi strain 30a NODE_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30402.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
heavy metal efflux pump CzcA; K07239 heavy-metal exporter, HME family
SCNpilot_cont_300_bf_scaffold_2345_curated_2
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1461..1859)
DNA (399bp) protein (133aa)
metal transporter n=1 Tax=Sphingomonas melonis RepID=UPI000376DE79
DNA, contig: SP667 {ECO:0000313|EMBL:GAN15805.1}; Flags: Fragment;; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
metal ion efflux membrane fusion protein family protein; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_cont_300_bf_scaffold_2345_curated_3
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2562..3821)
DNA (1260bp) protein (420aa)
Outer membrane efflux family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X2N7_9SPHN
CzcC protein {ECO:0000313|EMBL:GAN15807.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
SCNpilot_cont_300_bf_scaffold_2345_curated_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4573..5697)
DNA (1125bp) protein (375aa)
High-affinity nickel-transport family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X2N5_9SPHN
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15809.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
high-affinity nickel-transporter
SCNpilot_cont_300_bf_scaffold_2345_curated_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5835..6104
DNA (270bp) protein (90aa)
Uncharacterized BCR, COG1937 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X2N4_9SPHN
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15810.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2345_curated_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6348..6911
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003778968
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2345_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6969..7166)
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037233B0
Sphingomonas taxi strain 30a NODE_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30407.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2345_curated_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7163..7480)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000365B8EA
Sphingomonas taxi strain 30a NODE_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30408.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2345_curated_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7501..8154)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037F26E3
Sphingomonas taxi strain 30a NODE_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30409.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2345_curated_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8151..9086)
DNA (936bp) protein (312aa)
antirestriction protein ArdC n=1 Tax=Sphingomonas melonis RepID=UPI000380E39E
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15815.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ardC; putative antirestriction protein ArdC
SCNpilot_cont_300_bf_scaffold_2345_curated_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9526..10149)
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037E1AFF
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15816.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_2345_curated_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10357..11148)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037EDE0B
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15817.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2345_curated_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11271..11549)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003697121
Sphingomonas taxi strain 30a NODE_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIU25844.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2345_curated_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11551..11904)
DNA (354bp) protein (118aa)
peptidase C14 n=1 Tax=Sphingomonas melonis RepID=UPI000370F0D2
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15819.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
peptidase (caspase-1 like protein)
SCNpilot_cont_300_bf_scaffold_2345_curated_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12457..12828)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037BAF87
Sphingomonas taxi strain 30a NODE_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIU25846.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2345_curated_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13500..14102)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000371C3EC
Sphingomonas taxi strain 30a NODE_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIU25847.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_2345_curated_17
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14099..14422)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036EFE12
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15823.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_2345_curated_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14663..15010
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036ECF7D
Sphingomonas taxi strain 30a NODE_110, whole genome shotgun sequence {ECO:0000313|EMBL:KIU25811.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
transposase
SCNpilot_cont_300_bf_scaffold_2345_curated_19
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15031..15420
DNA (390bp) protein (130aa)
transposase IS4 n=1 Tax=Sphingomonas melonis RepID=UPI00035C91DF
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15825.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
IS4 family transposase
SCNpilot_cont_300_bf_scaffold_2345_curated_20
Sphingomonas sp. KSM1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15513..16520
DNA (1008bp) protein (336aa)
Putative IS110 family transposase n=1 Tax=Sphingomonas sp. KSM1 RepID=M1VB86_9SPHN
Putative IS110 family transposase {ECO:0000313|EMBL:BAM93320.1}; TaxID=1228049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. KSM1.;"
transposase; K07486 transposase rbh
SCNpilot_cont_300_bf_scaffold_2345_curated_21
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16799..19051
DNA (2253bp) protein (751aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003809717
Copper/silver efflux system membrane protein CusA/CzcA {ECO:0000313|EMBL:KHS49469.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
heavy metal efflux system protein; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_300_bf_scaffold_2345_curated_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19077..19700
DNA (624bp) protein (208aa)
transporter n=1 Tax=Sphingomonas melonis RepID=UPI00036F4905
Sphingomonas taxi strain 30a NODE_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIU25987.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2345_curated_23
unknown

Not on your lists

19697..19936
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035E2023
SCNpilot_cont_300_bf_scaffold_2345_curated_24
unknown

Not on your lists

19986..20129
DNA (144bp) protein (48aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000363858F
SCNpilot_cont_300_bf_scaffold_2345_curated_25
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20129..20431
DNA (303bp) protein (101aa)
cation transporter n=1 Tax=Sphingomonas melonis RepID=UPI0003760E0E
Cobalt-zinc-cadmium resistance protein {ECO:0000313|EMBL:EAQ33604.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
cobalt-zinc-cadmium resistance protein CzcD; K03295 cation efflux system protein, CDF family
Displaying 25 items

View Taxonomy