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SCNpilot_cont_300_bf_scaffold_565_curated

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_565_curated_1
unknown

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2..88
DNA (87bp) protein (29aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_565_curated_2
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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105..1016
DNA (912bp) protein (304aa)
Capsular polysaccharide export protein, putative n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PAR8_9SPHN
Capsular polysaccharide export protein, putative {ECO:0000313|EMBL:EDL49323.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
polysaccharide export protein; K01991 polysaccharide export outer membrane protein
SCNpilot_cont_300_bf_scaffold_565_curated_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1042..2373
DNA (1332bp) protein (444aa)
Chain length determinant protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PAR9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS41757.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
chain length determinant protein
SCNpilot_cont_300_bf_scaffold_565_curated_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2377..3084
DNA (708bp) protein (236aa)
chain length determinant protein tyrosine kinase EpsG (EC:2.7.10.2)
Diutan polysaccharide export protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z526_9SPHN
Protein-tyrosine kinase {ECO:0000313|EMBL:KHS41756.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_cont_300_bf_scaffold_565_curated_5
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3074..3979
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PAS1_9SPHN
Transmembrane protein EpsH {ECO:0000313|EMBL:KHS41755.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
transmembrane protein EpsH
SCNpilot_cont_300_bf_scaffold_565_curated_6
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3976..4677
DNA (702bp) protein (234aa)
GelN n=1 Tax=Sphingomonas elodea RepID=Q840V0_SPHEL
Methanolan biosynthesis EpsI {ECO:0000313|EMBL:KHS41754.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_565_curated_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4700..5305)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3A7_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27666.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_565_curated_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5361..5894)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3A7_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27666.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_565_curated_9
unknown

Not on your lists

6051..7202
DNA (1152bp) protein (384aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_565_curated_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7893..8987
DNA (1095bp) protein (365aa)
Acyltransferase 3 n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SUD1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:AJP72128.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
acetyltransferase
SCNpilot_cont_300_bf_scaffold_565_curated_11
Hyphomonas sp. CY54-11-8, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8984..10243
DNA (1260bp) protein (420aa)
Possible polysaccharide export protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0THB2_PARBH
Uncharacterized protein {ECO:0000313|EMBL:KCZ50119.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
polysaccharide export protein; K03328 polysaccharide transporter, PST family
SCNpilot_cont_300_bf_scaffold_565_curated_12
unknown

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10243..10488
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_565_curated_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10619..12178
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PAQ9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS41769.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_cont_300_bf_scaffold_565_curated_14
unknown

Not on your lists

comp(12284..12544)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_565_curated_15
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12631..14544)
DNA (1914bp) protein (638aa)
Adenylylsulfate kinase {ECO:0000313|EMBL:AHE54225.1}; EC=2.7.1.25 {ECO:0000313|EMBL:AHE54225.1};; EC=2.7.7.4 {ECO:0000313|EMBL:AHE54225.1};; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein (EC:2.7.7.4)
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8H4_9SPHN
SCNpilot_cont_300_bf_scaffold_565_curated_16
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14544..15458)
DNA (915bp) protein (305aa)
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4); K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Sulfate adenylyltransferase subunit 2 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VBM1_SPHWW
SCNpilot_cont_300_bf_scaffold_565_curated_17
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15513..16481
DNA (969bp) protein (323aa)
Regulatory protein, LuxR n=2 Tax=Sphingomonas wittichii RepID=A5VBM0_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:AHE54227.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
regulatory protein LuxR
SCNpilot_cont_300_bf_scaffold_565_curated_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16808..17296
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003799C15
Calcium-binding protein {ECO:0000313|EMBL:AIT07664.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
signal transduction protein with EFhand domain
SCNpilot_cont_300_bf_scaffold_565_curated_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17320..18459
DNA (1140bp) protein (380aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
queuine tRNA-ribosyltransferase n=1 Tax=Sphingomonas melonis RepID=UPI0003782012
SCNpilot_cont_300_bf_scaffold_565_curated_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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18462..18650
DNA (189bp) protein (63aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X0M2_9SPHN
DNA, contig: SP602 {ECO:0000313|EMBL:GAN12060.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_565_curated_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18677..21490
DNA (2814bp) protein (938aa)
peptidase M16; K07263 zinc protease [EC:3.4.24.-]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380152D
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26186.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_565_curated_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21545..22498
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000366E370
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26185.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cell wall hydrolase SleB
SCNpilot_cont_300_bf_scaffold_565_curated_23
unknown

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comp(22591..22821)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_565_curated_24
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(22950..23357)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F0E7FC
Surface antigen {ECO:0000313|EMBL:KIY14667.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
17 kDa surface antigen
SCNpilot_cont_300_bf_scaffold_565_curated_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23475..25733)
DNA (2259bp) protein (753aa)
Sphingomonas taxi strain 30a NODE_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28048.1}; EC=1.1.1.40 {ECO:0000313|EMBL:KIU28048.1};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
bifunctional malic enzyme oxidoreductase/phosphotransacetylase (EC:1.1.1.40)
malic enzyme n=1 Tax=Sphingomonas melonis RepID=UPI000376F18B
SCNpilot_cont_300_bf_scaffold_565_curated_26
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25784..26341)
DNA (558bp) protein (186aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
DNA-3-methyladenine glycosylase I n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFF1_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:KKC23778.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
SCNpilot_cont_300_bf_scaffold_565_curated_27
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26418..28991
DNA (2574bp) protein (858aa)
DNA mismatch repair protein MutS n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6549F
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_cont_300_bf_scaffold_565_curated_28
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29189..30010)
DNA (822bp) protein (274aa)
peptidase U61, LD-carboxypeptidase A; K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
LD-carboxypeptidase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZI2_9SPHN
Carboxypeptidase {ECO:0000313|EMBL:AIT06800.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_565_curated_29
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30202..31587
DNA (1386bp) protein (462aa)
Mur ligase middle domain-containing protein; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
UDP-N-acetylmuramate--alanine ligase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3B65A
Mur ligase family, catalytic domain protein {ECO:0000313|EMBL:EZP52547.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_300_bf_scaffold_565_curated_30
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31811..32515
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003779B82
Putative hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) {ECO:0000313|EMBL:EZP52551.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
alpha/beta hydrolase fold protein
Displaying items 1-30 of 45 in total

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