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SCNpilot_cont_300_bf_scaffold_3334_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3334_curated_1
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..662
DNA (660bp) protein (220aa)
ubiquinone biosynthesis protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A960B2
Ubiquinone biosynthesis protein {ECO:0000313|EMBL:AJR26711.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase
SCNpilot_cont_300_bf_scaffold_3334_curated_2
Exiguobacterium sp. S17, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(633..1415)
DNA (783bp) protein (261aa)
Acyltransferase family protein n=2 Tax=Bacteria RepID=S3GDE3_9BACL
Acyltransferase family protein {ECO:0000313|EMBL:EPE60618.1}; TaxID=856854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium sp. S17.;"
Acetyltransferase
SCNpilot_cont_300_bf_scaffold_3334_curated_3
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2055..2288)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003608B72
DNA, contig: SP670 {ECO:0000313|EMBL:GAN15871.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
flagellar biosynthetic protein FliQ; K02420 flagellar biosynthetic protein FliQ
SCNpilot_cont_300_bf_scaffold_3334_curated_4
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2330..3256)
DNA (927bp) protein (309aa)
Copper resistance D family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X361_9SPHN
Copper resistance protein CopD {ECO:0000313|EMBL:KFL47210.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
copper resistance D; K07245 putative copper resistance protein D
SCNpilot_cont_300_bf_scaffold_3334_curated_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3261..3629)
DNA (369bp) protein (123aa)
copper resistance protein CopC n=1 Tax=Sphingomonas melonis RepID=UPI0003612B74
CopC protein {ECO:0000313|EMBL:GAN15873.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
copD; copper resistance protein D transmembrane component CopD; K07156
SCNpilot_cont_300_bf_scaffold_3334_curated_6
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3846..4826
DNA (981bp) protein (327aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Pyridine nucleotide-disulfide oxidoreductase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X363_9SPHN
Thioredoxin reductase {ECO:0000313|EMBL:AKH18908.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_cont_300_bf_scaffold_3334_curated_7
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5166..6206)
DNA (1041bp) protein (347aa)
transposase IS110 n=1 Tax=Sphingomonas wittichii RepID=UPI00031D01DA
Transposase IS110 {ECO:0000313|EMBL:KFG88779.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
transposase IS116/IS110/IS902 family protein
SCNpilot_cont_300_bf_scaffold_3334_curated_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6620..7060
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288B2CD
DNA, contig: SP670 {ECO:0000313|EMBL:GAN15875.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3334_curated_9
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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7057..7641
DNA (585bp) protein (195aa)
FecI sigma-24 factor n=1 Tax=Sphingomonas melonis RepID=UPI00036161E8
FecI sigma-24 factor {ECO:0000313|EMBL:KIJ72444.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_3334_curated_10
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8509..10500
DNA (1992bp) protein (664aa)
copper-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6380F
Putative multicopper oxidase {ECO:0000313|EMBL:KHS45212.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
copper resistance protein CopA
SCNpilot_cont_300_bf_scaffold_3334_curated_11
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10497..11708
DNA (1212bp) protein (404aa)
UPI0003D65338 related cluster n=1 Tax=unknown RepID=UPI0003D65338
Copper resistance protein CopB {ECO:0000313|EMBL:ETI65495.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
copper resistance protein CopB; K07233 copper resistance protein B
SCNpilot_cont_300_bf_scaffold_3334_curated_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11732..12343
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035E4B05
Sphingomonas taxi strain 30a NODE_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26874.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cytochrome c family protein
Displaying 12 items

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