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SCNpilot_cont_300_bf_scaffold_3193_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3193_curated_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1214)
DNA (1212bp) protein (404aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000375E450
SCNpilot_cont_300_bf_scaffold_3193_curated_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1278..1700)
DNA (423bp) protein (141aa)
50S ribosomal protein L17 n=1 Tax=Sphingomonas sp. S17 RepID=F3WXW3_9SPHN
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_cont_300_bf_scaffold_3193_curated_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1919..2980)
DNA (1062bp) protein (354aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Sphingomonas melonis RepID=UPI0003812FDB
SCNpilot_cont_300_bf_scaffold_3193_curated_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3072..3461)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037D5867
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
30S ribosomal protein S11
SCNpilot_cont_300_bf_scaffold_3193_curated_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3575..3943)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Sphingomonas melonis RepID=UPI000368BBAB
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rpsM; 30S ribosomal protein S13
SCNpilot_cont_300_bf_scaffold_3193_curated_6
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4534..5184)
DNA (651bp) protein (217aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomon
adenylate kinase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CBCE8
SCNpilot_cont_300_bf_scaffold_3193_curated_7
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5218..6561)
DNA (1344bp) protein (448aa)
Protein translocase subunit SecY n=1 Tax=Sphingomonas sp. S17 RepID=F3X0I0_9SPHN
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
secY; preprotein translocase subunit SecY
SCNpilot_cont_300_bf_scaffold_3193_curated_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6679..7032)
DNA (354bp) protein (118aa)
50S ribosomal protein L15 n=1 Tax=Sphingomonas elodea RepID=UPI00026305BC
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
SCNpilot_cont_300_bf_scaffold_3193_curated_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7244..8407)
DNA (1164bp) protein (388aa)
acyltransferase 3 n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289F1A0
acyltransferase
Acyltransferase 3 {ECO:0000313|EMBL:ABD25040.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_3193_curated_10
Sphingomonas aquatilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8504..8680)
DNA (177bp) protein (59aa)
50S ribosomal protein L30 n=1 Tax=Sphingomonas aquatilis RepID=I0IW25_9SPHN
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=93063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas aquatilis.;"
rpmD; 50S ribosomal protein L30
SCNpilot_cont_300_bf_scaffold_3193_curated_11
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8686..9402)
DNA (717bp) protein (239aa)
30S ribosomal protein S5 n=1 Tax=Sphingomonas sp. S17 RepID=F3X0I3_9SPHN
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
rpsE; 30S ribosomal protein S5
SCNpilot_cont_300_bf_scaffold_3193_curated_12
Sphingomonas adhaesiva, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9406..9756)
DNA (351bp) protein (117aa)
50S ribosomal protein L18 n=1 Tax=Sphingomonas adhaesiva RepID=I0IW15_9SPHN
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=28212 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas adhaesiva.;"
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
SCNpilot_cont_300_bf_scaffold_3193_curated_13
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9753..10286)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Sphingomonas melonis RepID=UPI00037CEEDA
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
SCNpilot_cont_300_bf_scaffold_3193_curated_14
Sphingomonas adhaesiva, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10286..10741)
DNA (456bp) protein (152aa)
30S ribosomal protein S8 n=1 Tax=Sphingomonas adhaesiva RepID=I0IW14_9SPHN
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=28212 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas adhaesiva.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_cont_300_bf_scaffold_3193_curated_15
Sphingomonas adhaesiva, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10745..11095)
DNA (351bp) protein (117aa)
50S ribosomal protein L18 n=1 Tax=Sphingomonas adhaesiva RepID=I0IW15_9SPHN
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=28212 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas adhaesiva.;"
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
SCNpilot_cont_300_bf_scaffold_3193_curated_16
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11092..11625)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Sphingomonas melonis RepID=UPI00037CEEDA
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
SCNpilot_cont_300_bf_scaffold_3193_curated_17
Sphingomonas adhaesiva, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11625..12020)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035C8151
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=28212 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas adhaesiva.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_cont_300_bf_scaffold_3193_curated_18
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12033..12338)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488B34
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
SCNpilot_cont_300_bf_scaffold_3193_curated_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12378..12962)
DNA (585bp) protein (195aa)
50S ribosomal protein L5 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZBB3_9SPHN
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
SCNpilot_cont_300_bf_scaffold_3193_curated_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12955..13272)
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B71CFB
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
SCNpilot_cont_300_bf_scaffold_3193_curated_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13272..13640)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZBB5_9SPHN
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
Displaying 21 items

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