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SCNpilot_cont_300_bf_scaffold_640_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_640_curated_1
unknown

Not on your lists

18..1886
DNA (1869bp) protein (623aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_640_curated_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1901..2926
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0INY4_9SPHN
DNA primase {ECO:0000313|EMBL:AJP73435.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3234..4157
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V2P5_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:AJP73434.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_4
unknown

Not on your lists

4339..4530
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_640_curated_5
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4580..5254)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI00035FE3A1
Uncharacterized protein {ECO:0000313|EMBL:CCM80218.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_6
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5205..6128)
DNA (924bp) protein (308aa)
SMF protein n=1 Tax=Methylocystis parvus RepID=UPI0002F4E105
DNA-binding protein {ECO:0000313|EMBL:AJR26920.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SMF protein; K04096 DNA processing protein
SCNpilot_cont_300_bf_scaffold_640_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6340..7260
DNA (921bp) protein (307aa)
Putative nucleotidyltransferase n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z5C5_SPHJU
DNA-binding protein {ECO:0000313|EMBL:AJP74656.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative nucleotidyltransferase
SCNpilot_cont_300_bf_scaffold_640_curated_8
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7271..8137
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NBV0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAT08503.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_9
unknown

Not on your lists

comp(8144..8707)
DNA (564bp) protein (188aa)
NERD domain-containing protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002896A25
SCNpilot_cont_300_bf_scaffold_640_curated_10
Pseudomonas mandelii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8752..11397)
DNA (2646bp) protein (882aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034D07DD
Uncharacterized protein {ECO:0000313|EMBL:AHZ72104.1}; TaxID=1147786 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mandelii JR-1.;"
nuclease-like protein
SCNpilot_cont_300_bf_scaffold_640_curated_11
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11784..11951
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHF1_GLUDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI52521.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_300_bf_scaffold_640_curated_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12929..13252
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBF6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:AJP73422.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_13
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13448..14179
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5BAF1
Uncharacterized protein {ECO:0000313|EMBL:EXL02504.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_cont_300_bf_scaffold_640_curated_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14301..14576
DNA (276bp) protein (92aa)
Transcriptional regulator n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IJ72_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:AJP73421.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14573..15103
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4Z5_9BRAD
Glycosidase {ECO:0000313|EMBL:AJP74652.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_16
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15100..15696
DNA (597bp) protein (199aa)
Conjugal transfer protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHQ6_GLUDA
conjugal transfer protein
Conjugal transfer protein {ECO:0000313|EMBL:ACI52534.1}; Flags: Precursor;; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_300_bf_scaffold_640_curated_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15680..16024
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Gluconacetobacter europaeus RepID=UPI000237DEF7
Uncharacterized protein {ECO:0000313|EMBL:AJP73420.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16024..16731
DNA (708bp) protein (236aa)
UPI0003D5DFA8 related cluster n=1 Tax=unknown RepID=UPI0003D5DFA8
Uncharacterized protein {ECO:0000313|EMBL:AJP73419.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
lytic transglycosylase
SCNpilot_cont_300_bf_scaffold_640_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17198..18721
DNA (1524bp) protein (508aa)
type VI secretion protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5A6BF
Type VI secretion protein {ECO:0000313|EMBL:AJP74651.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18734..20707
DNA (1974bp) protein (658aa)
UPI0003CFF5AC related cluster n=1 Tax=unknown RepID=UPI0003CFF5AC
Conjugal transfer protein TraG {ECO:0000313|EMBL:AJP73418.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
conjugal transfer coupling protein TraG
SCNpilot_cont_300_bf_scaffold_640_curated_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20704..21159
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B56B44
CopG domain-containing protein {ECO:0000313|EMBL:AJP73417.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_22
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21260..21535)
DNA (276bp) protein (92aa)
Uncharacterized protein {ECO:0000313|EMBL:KHA65695.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_300_bf_scaffold_640_curated_23
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21532..22011)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B64A4B
Uncharacterized protein {ECO:0000313|EMBL:EXS70612.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
activator of Hsp90 ATPase 1 family protein
SCNpilot_cont_300_bf_scaffold_640_curated_24
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22008..24542)
DNA (2535bp) protein (845aa)
ATPase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9C01
ATPase {ECO:0000313|EMBL:EXS70615.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
heavy metal translocating P-type ATPase
SCNpilot_cont_300_bf_scaffold_640_curated_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24586..25272)
DNA (687bp) protein (229aa)
transporter n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002882DF9
Sphingomonas taxi strain 30a NODE_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIU25922.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ZIP-family zinc transporter; K07238 zinc transporter, ZIP family
SCNpilot_cont_300_bf_scaffold_640_curated_26
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25376..25717)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9BE8
Uncharacterized protein {ECO:0000313|EMBL:ETI65151.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein; K09137 hypothetical protein
SCNpilot_cont_300_bf_scaffold_640_curated_27
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25720..28980)
DNA (3261bp) protein (1087aa)
Heavy metal efflux pump CzcA n=1 Tax=Novosphingobium sp. PP1Y RepID=F6INW0_9SPHN
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:CCA93112.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
heavy metal efflux pump CzcA; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_300_bf_scaffold_640_curated_28
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29120..30286)
DNA (1167bp) protein (389aa)
UPI0003D67AF6 related cluster n=1 Tax=unknown RepID=UPI0003D67AF6
Metal ion efflux membrane fusion protein family {ECO:0000313|EMBL:KFL45309.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_cont_300_bf_scaffold_640_curated_29
unknown

Not on your lists

comp(30283..30378)
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying 29 items

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