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SCNpilot_cont_300_bf_scaffold_247_curated

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_247_curated_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..419
DNA (417bp) protein (139aa)
RNA polymerase subunit sigma-70 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030F69CA
RNA polymerase subunit sigma-70 {ECO:0000313|EMBL:AJP72233.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
sigma-70 region 2
SCNpilot_cont_300_bf_scaffold_247_curated_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(424..879)
DNA (456bp) protein (152aa)
histone acetyltransferase HPA2-like acetyltransferase; K03829 putative acetyltransferase [EC:2.3.1.-]
N-acetyltransferase GCN5 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVF3_9SPHN
Acetyltransferase {ECO:0000313|EMBL:AJP73946.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_247_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(912..2030)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI000263166A
Uncharacterized protein {ECO:0000313|EMBL:AJP73947.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase M14, carboxypeptidase A
SCNpilot_cont_300_bf_scaffold_247_curated_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2027..2626)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000380F6FF
Uncharacterized protein {ECO:0000313|EMBL:AJP73948.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_247_curated_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2799..2924
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL36_NOVAD
rpmJ; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
50S ribosomal protein L36 {ECO:0000255|HAMAP-Rule:MF_00251}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_247_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2930..3541
DNA (612bp) protein (204aa)
putative hydrolase (EC:3.8.1.2)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037503EA
Sphingomonas taxi strain 30a NODE_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26534.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_247_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3578..5056)
DNA (1479bp) protein (493aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:AJP73952.1}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
pyruvate kinase n=1 Tax=Sphingomonas elodea RepID=UPI0002631635
SCNpilot_cont_300_bf_scaffold_247_curated_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5132..5494
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631636
Uncharacterized protein {ECO:0000313|EMBL:AJP73953.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_247_curated_9
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(5457..6305)
DNA (849bp) protein (283aa)
Uncharacterized protein id=4685820 bin=GWA2_Elusimicrobia_69_24 species=Rhodanobacter denitrificans genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=GWA2_Elusimicrobia_69_24_curated
SCNpilot_cont_300_bf_scaffold_247_curated_10
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6425..8101
DNA (1677bp) protein (559aa)
Beta-lactamase n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PLB2_9BURK
Beta-lactamase {ECO:0000313|EMBL:ELX12369.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
beta-lactamase family protein
SCNpilot_cont_300_bf_scaffold_247_curated_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8166..8402
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Sphingomonas RepID=UPI0002631638
UPF0335 protein TS85_22335 {ECO:0000256|HAMAP-Rule:MF_00797}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_247_curated_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8528..9271
DNA (744bp) protein (248aa)
transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000308126E
Probable transcriptional regulatory protein SR41_13675 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_247_curated_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9519..10007
DNA (489bp) protein (163aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Crossover junction endodeoxyribonuclease ruvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
crossover junction endodeoxyribonuclease RuvC n=1 Tax=Sphingomonas elodea RepID=UPI0002632216
SCNpilot_cont_300_bf_scaffold_247_curated_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10250..10849
DNA (600bp) protein (200aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Holliday junction ATP-dependent DNA helicase ruvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction DNA helicase RuvA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FEF530
SCNpilot_cont_300_bf_scaffold_247_curated_15
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10846..11244
DNA (399bp) protein (133aa)
Putative lyase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HTL8_RUBGI
Uncharacterized protein {ECO:0000313|EMBL:AHE52532.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
putative lyase
SCNpilot_cont_300_bf_scaffold_247_curated_16
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11216..12145)
DNA (930bp) protein (310aa)
D-2-hydroxyacid dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FEF219
DNA, contig: SP658 {ECO:0000313|EMBL:GAN15501.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
glyoxylate reductase
SCNpilot_cont_300_bf_scaffold_247_curated_17
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12192..12746
DNA (555bp) protein (185aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5M0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO39565.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_247_curated_18
unknown

Not on your lists

12743..13147
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_247_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13144..14166
DNA (1023bp) protein (341aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction DNA helicase RuvB n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030BBF60
SCNpilot_cont_300_bf_scaffold_247_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14212..14658
DNA (447bp) protein (149aa)
thioesterase n=1 Tax=Sphingomonas elodea RepID=UPI00026312E6
Thioesterase {ECO:0000313|EMBL:AJP73038.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
4-hydroxybenzoyl-CoA thioesterase
SCNpilot_cont_300_bf_scaffold_247_curated_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14666..15355
DNA (690bp) protein (230aa)
biopolymer transporter ExbB n=1 Tax=Sphingomonas elodea RepID=UPI00026312E7
Biopolymer transporter ExbB {ECO:0000313|EMBL:AJP73037.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
tolQ; biopolymer transport protein TolQ; K03562 biopolymer transport protein TolQ
SCNpilot_cont_300_bf_scaffold_247_curated_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15360..15803
DNA (444bp) protein (148aa)
biopolymer transporter TolR n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E8CA5C
Biopolymer transporter TolR {ECO:0000313|EMBL:AJP73036.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
tolR; biopolymer transport protein TolR/ExbD; K03560 biopolymer transport protein TolR
SCNpilot_cont_300_bf_scaffold_247_curated_23
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15803..16594
DNA (792bp) protein (264aa)
Putative TolA n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EVS4_SPHCR
putative TolA protein
Putative TolA {ECO:0000313|EMBL:AEG49726.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_247_curated_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16597..17970
DNA (1374bp) protein (458aa)
translocation protein TolB n=1 Tax=Sphingomonas elodea RepID=UPI00026312EA
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
tolB; translocation protein TolB; K03641 TolB protein
SCNpilot_cont_300_bf_scaffold_247_curated_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18039..18551
DNA (513bp) protein (171aa)
peptidoglycan-binding protein n=1 Tax=Sphingomonas elodea RepID=UPI00026312EB
Membrane protein {ECO:0000313|EMBL:AJP74578.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidoglycan-associated lipoprotein
SCNpilot_cont_300_bf_scaffold_247_curated_26
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18615..19982)
DNA (1368bp) protein (456aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003768B81
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_300_bf_scaffold_247_curated_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20114..21019
DNA (906bp) protein (302aa)
membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI00026312EC
Membrane protein {ECO:0000313|EMBL:AJP73033.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_247_curated_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21037..21252
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D820C0
Uncharacterized protein {ECO:0000313|EMBL:AJP73032.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_247_curated_29
unknown

Not on your lists

21378..21479
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_247_curated_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21476..21748
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026312EE
Uncharacterized protein {ECO:0000313|EMBL:AJP73030.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
Displaying items 1-30 of 105 in total

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