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SCNpilot_cont_300_bf_scaffold_197_curated

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_197_curated_1
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(484..1407)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IQ41_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM99780.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_197_curated_2
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1475..2626)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Pseudomonas sp. 45MFCol3.1 RepID=UPI0003807584
Strain MEJ086 contig_13, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03285.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
2-methylthioadenine synthetase
SCNpilot_cont_300_bf_scaffold_197_curated_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2721..3173)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000367B276
Uncharacterized protein {ECO:0000313|EMBL:EKS31070.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_197_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3176..4363)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003815971
Uncharacterized protein {ECO:0000313|EMBL:EYR79812.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_197_curated_5
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4521..5468
DNA (948bp) protein (316aa)
UPI0003CDE2F7 related cluster n=1 Tax=unknown RepID=UPI0003CDE2F7
Uncharacterized protein {ECO:0000313|EMBL:ESY01468.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC405B00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_197_curated_6
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6073..7773)
DNA (1701bp) protein (567aa)
Hemolysin activation/secretion protein n=1 Tax=Sphingobium sp. AP49 RepID=J2CNB2_9SPHN
Hemolysin activation/secretion protein {ECO:0000313|EMBL:EJK78414.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
surface antigen (D15)
SCNpilot_cont_300_bf_scaffold_197_curated_7
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7773..8801)
DNA (1029bp) protein (343aa)
Uncharacterized protein (Fragment) n=1 Tax=Sphingobium sp. AP49 RepID=J2W748_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJK78415.1}; Flags: Precursor; Fragment;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
filamentous hemagglutinin family outer membrane protein
SCNpilot_cont_300_bf_scaffold_197_curated_8
unknown

Not on your lists

8874..9233
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_197_curated_9
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9901..10446
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036E0147
RNA polymerase sigma factor {ECO:0000313|EMBL:KGB56848.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_197_curated_10
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10552..12291
DNA (1740bp) protein (580aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000376CB53
Magnesium chelatase subunit D {ECO:0000313|EMBL:KGB56847.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein; K07114 uncharacterized protein
SCNpilot_cont_300_bf_scaffold_197_curated_11
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12464..13615
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000362B42E
Uncharacterized protein {ECO:0000313|EMBL:AJA08125.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_197_curated_12
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13673..14797)
DNA (1125bp) protein (375aa)
NADH oxidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030EFAD0
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32264.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
NADPH:quinone reductase
SCNpilot_cont_300_bf_scaffold_197_curated_13
unknown

Not on your lists

15020..15187
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_197_curated_14
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15338..18331)
DNA (2994bp) protein (998aa)
TonB-dependent receptor, partial n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3AF
TonB-dependent receptor {ECO:0000313|EMBL:AJA08098.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
fepA_1; TonB dependent receptor for iron chelates
SCNpilot_cont_300_bf_scaffold_197_curated_15
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18425..19372)
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003671CA8
Uncharacterized protein {ECO:0000313|EMBL:AJA08099.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
FecR family protein
SCNpilot_cont_300_bf_scaffold_197_curated_16
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19369..19905)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000365AC71
Uncharacterized protein {ECO:0000313|EMBL:AJA08100.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_197_curated_17
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20093..20974
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003764C44
Uncharacterized protein {ECO:0000313|EMBL:AJA08101.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_197_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21071..21832
DNA (762bp) protein (254aa)
Nucleoside triphosphate hydrolase {ECO:0000313|EMBL:AJP71644.1}; EC=3.6.1.19 {ECO:0000313|EMBL:AJP71644.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
MazG family protein; K04765 ATP diphosphatase [EC:3.6.1.8]
nucleotide pyrophosphohydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030F7FF1
SCNpilot_cont_300_bf_scaffold_197_curated_19
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21832..22128
DNA (297bp) protein (99aa)
YCII-related domain-containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ENL5_9BURK
YCII-related domain-containing protein {ECO:0000313|EMBL:EJE53769.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_197_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22133..23422)
DNA (1290bp) protein (430aa)
GTPase HflX n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E7CB94
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900, ECO:0000313|EMBL:AJP71643.1}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
HSR1-like GTP-binding protein
SCNpilot_cont_300_bf_scaffold_197_curated_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23435..23920)
DNA (486bp) protein (162aa)
RNA-binding protein Hfq n=1 Tax=Sphingomonas elodea RepID=UPI00026310BC
RNA-binding protein Hfq {ECO:0000256|SAAS:SAAS00067493, ECO:0000313|EMBL:AJP71642.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hfq; RNA-binding protein Hfq; K03666 host factor-I protein
SCNpilot_cont_300_bf_scaffold_197_curated_22
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24221..24538
DNA (318bp) protein (106aa)
membrane protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BD8E
Cation/cationic drug transporter {ECO:0000313|EMBL:KEZ20830.1}; Multidrug transporter {ECO:0000313|EMBL:KFD25895.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
small multidrug resistance protein; K11741 quaternary ammonium compound-resistance protein SugE
SCNpilot_cont_300_bf_scaffold_197_curated_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24602..25981)
DNA (1380bp) protein (460aa)
ATPase AAA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030AABC3
ATPase AAA {ECO:0000313|EMBL:AJP71641.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
two component sigma-54 specific Fis family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_197_curated_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25978..28233)
DNA (2256bp) protein (752aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ATPase n=1 Tax=Sphingomonas elodea RepID=UPI00026310BA
multi-sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_197_curated_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28294..29739)
DNA (1446bp) protein (482aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E139D3
Chemotaxis protein CheY {ECO:0000313|EMBL:AJP71640.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Fis family nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
SCNpilot_cont_300_bf_scaffold_197_curated_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29736..30833)
DNA (1098bp) protein (366aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:AJP71639.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
nitrogen-specific signal transduction histidine kinase NtrB (EC:2.7.3.-); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
histidine kinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D670F6
SCNpilot_cont_300_bf_scaffold_197_curated_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30809..31807)
DNA (999bp) protein (333aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621, ECO:0000313|EMBL:AJP71638.1}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
tRNA-dihydrouridine synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031DF82D
dihydrouridine synthase TIM-barrel protein nifR3
SCNpilot_cont_300_bf_scaffold_197_curated_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32053..33177
DNA (1125bp) protein (375aa)
ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein (EC:4.6.1.12)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F22422
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_197_curated_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33317..33862
DNA (546bp) protein (182aa)
competence protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631730
Competence protein {ECO:0000313|EMBL:AJP71636.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
CinA domain-containing protein; K03743
SCNpilot_cont_300_bf_scaffold_197_curated_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33778..34284)
DNA (507bp) protein (169aa)
cyclase n=1 Tax=Sphingomonas elodea RepID=UPI0002631731
Cyclase {ECO:0000313|EMBL:AJP71635.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative oligoketide cyclase
Displaying items 1-30 of 115 in total

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