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SCNpilot_cont_300_bf_scaffold_210_curated

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_210_curated_1
Aphanomyces invadans, Aphanomyces, Saprolegniales, Eukaryota

Not on your lists

comp(1..9564)
DNA (9564bp) protein (3188aa)
hypothetical protein n=3 Tax=Xanthobacteraceae RepID=UPI0003806DF2
Uncharacterized protein {ECO:0000313|EMBL:ETW07846.1}; TaxID=157072 species="Eukaryota; Stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Aphanomyces.;" source="Aphanomyces invadans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_210_curated_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9729..10682)
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036DAD62
Uncharacterized protein {ECO:0000313|EMBL:AIT08077.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_210_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11022..13502
DNA (2481bp) protein (827aa)
WGS project CALM00000000 data, contig 701 n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5D7G3_STEMA
Uncharacterized protein {ECO:0000313|EMBL:AJP71132.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_210_curated_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13862..23908)
DNA (10047bp) protein (3349aa)
hypothetical protein, partial n=1 Tax=Sphingomonas elodea RepID=UPI000263138B
Uncharacterized protein {ECO:0000313|EMBL:GAD50929.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
membrane protein of unknown function
SCNpilot_cont_300_bf_scaffold_210_curated_5
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24130..26298)
DNA (2169bp) protein (723aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WDG3_9CAUL
TonB-dependent receptor
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
SCNpilot_cont_300_bf_scaffold_210_curated_6
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26383..27930)
DNA (1548bp) protein (516aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Caulobacter sp. AP07 RepID=J2HRB4_9CAUL
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:EJL38418.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
6-aminohexanoate-cyclic-dimer hydrolase rbh
SCNpilot_cont_300_bf_scaffold_210_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27959..29590)
DNA (1632bp) protein (544aa)
alkaline phosphatase (EC:3.1.3.1); K01113 alkaline phosphatase D [EC:3.1.3.1]
alkaline phosphatase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9360
Alkaline phosphatase {ECO:0000313|EMBL:AJP73094.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_210_curated_8
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29616..29978)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0CT15_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ79540.1}; Flags: Precursor;; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_210_curated_9
unknown

Not on your lists

comp(30047..30541)
DNA (495bp) protein (165aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_210_curated_10
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30646..34008)
DNA (3363bp) protein (1121aa)
TonB-dependent receptor domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WDG5_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KDP94900.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_210_curated_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34130..35005)
DNA (876bp) protein (292aa)
FecR family protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H3N4_CAUCN
Uncharacterized protein {ECO:0000313|EMBL:AJP70777.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
FecR family protein
SCNpilot_cont_300_bf_scaffold_210_curated_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35046..35561)
DNA (516bp) protein (172aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VHM0_CAUST
Uncharacterized protein {ECO:0000313|EMBL:AJP70776.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_210_curated_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35840..36610)
DNA (771bp) protein (257aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
NAD+ kinase (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23]
inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Sphingomonas elodea RepID=UPI000263028C
SCNpilot_cont_300_bf_scaffold_210_curated_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36607..37596)
DNA (990bp) protein (330aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
molybdenum cofactor biosynthesis protein MoeA n=1 Tax=Sphingomonas melonis RepID=UPI0003608CF6
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein
SCNpilot_cont_300_bf_scaffold_210_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37656..39638
DNA (1983bp) protein (661aa)
diguanylate cyclase n=1 Tax=Sphingomonas elodea RepID=UPI000263028A
Diguanylate cyclase {ECO:0000313|EMBL:AJP71838.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_cont_300_bf_scaffold_210_curated_16
unknown

Not on your lists

39635..40018
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_210_curated_17
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40021..40530)
DNA (510bp) protein (170aa)
GAF sensor hybrid histidine kinase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEQ2_SPHWW
GAF sensor hybrid histidine kinase
GAF sensor hybrid histidine kinase {ECO:0000313|EMBL:ABQ70768.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_210_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40901..44356)
DNA (3456bp) protein (1152aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
transcription-repair coupling factor n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000314372B
transcription-repair coupling factor
SCNpilot_cont_300_bf_scaffold_210_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44363..44629)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026306A5
Uncharacterized protein {ECO:0000313|EMBL:AJP71836.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_210_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44818..45036
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026306A4
Uncharacterized protein {ECO:0000313|EMBL:AJP71822.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_210_curated_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45087..47144
DNA (2058bp) protein (686aa)
DEAD/DEAH box helicase; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
ATP-dependent DNA helicase RecG n=1 Tax=Sphingomonas elodea RepID=UPI00026306A3
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:AJP71835.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_210_curated_22
unknown

Not on your lists

comp(47216..47515)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_210_curated_23
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47865..49283)
DNA (1419bp) protein (473aa)
UPI0003CE2192 related cluster n=1 Tax=unknown RepID=UPI0003CE2192
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_cont_300_bf_scaffold_210_curated_24
unknown

Not on your lists

49474..49662
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_210_curated_25
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49700..50020)
DNA (321bp) protein (107aa)
pilus assembly protein PilZ n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB07C
Uncharacterized protein {ECO:0000313|EMBL:KHA64839.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_300_bf_scaffold_210_curated_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50132..51445)
DNA (1314bp) protein (438aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
tyrS; tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
tyrosyl-tRNA synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003787D95
SCNpilot_cont_300_bf_scaffold_210_curated_27
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51646..53139
DNA (1494bp) protein (498aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B49F1C
Uncharacterized protein {ECO:0000313|EMBL:EZP54581.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_210_curated_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53182..53697
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028A0AFB
Uncharacterized protein {ECO:0000313|EMBL:AJP74382.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_210_curated_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53761..54957
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030EA081
Uncharacterized protein {ECO:0000313|EMBL:AJP71833.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_210_curated_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55002..56204
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI000263069D
Uncharacterized protein {ECO:0000313|EMBL:AJP74381.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
Displaying items 1-30 of 105 in total

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