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SCNpilot_cont_300_bf_scaffold_679_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_679_curated_1
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..861)
DNA (861bp) protein (287aa)
transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489426
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
Outer membrane efflux protein {ECO:0000313|EMBL:CCA93110.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_679_curated_2
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(927..1271)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GVU8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB04073.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_679_curated_3
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1406..2092)
DNA (687bp) protein (229aa)
UPI0003D5B737 related cluster n=1 Tax=unknown RepID=UPI0003D5B737
Cobalt transporter {ECO:0000313|EMBL:ETI65160.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
cation efflux protein
SCNpilot_cont_300_bf_scaffold_679_curated_4
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2133..2534
DNA (402bp) protein (134aa)
MerR family transcriptional regulator n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A0BF4C
MerR family transcriptional regulator {ECO:0000313|EMBL:AJR26709.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
MerR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_679_curated_5
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2552..4537)
DNA (1986bp) protein (662aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GTP9_9SPHN
Iron permease {ECO:0000313|EMBL:EXS68328.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
iron permease FTR1; K07243 high-affinity iron transporter
SCNpilot_cont_300_bf_scaffold_679_curated_6
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4930..5856
DNA (927bp) protein (309aa)
Conjugal transfer protein TrbB n=1 Tax=Sphingobium lactosutens DS20 RepID=T0II27_9SPHN
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EQB11360.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_300_bf_scaffold_679_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5853..6182
DNA (330bp) protein (110aa)
Conjugative transfer protein TrbC n=2 Tax=Sphingobium RepID=N1MS36_9SPHN
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AJP73415.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
type IV secretion system protein VirB2; K03197 type IV secretion system protein VirB2
SCNpilot_cont_300_bf_scaffold_679_curated_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6182..6460
DNA (279bp) protein (93aa)
Type IV secretory pathway, TrbD component n=1 Tax=Sphingobium sp. AP49 RepID=J2L9X4_9SPHN
Conjugal transfer protein {ECO:0000313|EMBL:AJP73414.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
type IV secretory pathway, VirB3 family protein
SCNpilot_cont_300_bf_scaffold_679_curated_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6468..8894
DNA (2427bp) protein (809aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X046_9SPHN
Conjugal transfer protein TrbE {ECO:0000313|EMBL:AJP70808.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
conjugal transfer ATPase TrbE
SCNpilot_cont_300_bf_scaffold_679_curated_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8900..9649
DNA (750bp) protein (250aa)
Conjugal transfer protein TrbJ n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YNH5_9SPHN
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:AJP70809.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
conjugal transfer protein TrbJ
SCNpilot_cont_300_bf_scaffold_679_curated_11
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9660..10013
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BA98
Uncharacterized protein {ECO:0000313|EMBL:KFI26671.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_679_curated_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10015..11475
DNA (1461bp) protein (487aa)
Conjugal transfer protein TrbL n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YP39_9SPHN
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AJP73411.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
trbL; P-type conjugative transfer protein TrbL
SCNpilot_cont_300_bf_scaffold_679_curated_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11482..12165
DNA (684bp) protein (228aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJD5_9SPHN
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AJP70811.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_300_bf_scaffold_679_curated_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12162..13154
DNA (993bp) protein (331aa)
UPI0003D02754 related cluster n=1 Tax=unknown RepID=UPI0003D02754
Conjugal transfer protein TrbG {ECO:0000313|EMBL:AJP73409.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
conjugal transfer protein TrbG
SCNpilot_cont_300_bf_scaffold_679_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13151..14356
DNA (1206bp) protein (402aa)
Conjugation TrbI-like protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCZ8_9SPHN
Conjugal transfer protein TraI {ECO:0000313|EMBL:AJP73408.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_cont_300_bf_scaffold_679_curated_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14353..14580
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV5_OLICO
Uncharacterized protein {ECO:0000313|EMBL:AJP73407.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_679_curated_17
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14704..15966
DNA (1263bp) protein (421aa)
Rhodospirillum photometricum DSM 122 draft genome sequence n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SQ78_RHOPH
hypothetical protein
Rhodospirillum photometricum DSM 122 draft genome sequence {ECO:0000313|EMBL:CCG09597.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
SCNpilot_cont_300_bf_scaffold_679_curated_18
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15980..17089
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M9K0_RHIL3
Wenxma_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ71235.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_679_curated_19
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17505..18053
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MQ92_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW19400.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_679_curated_20
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18053..19372
DNA (1320bp) protein (440aa)
HfaB protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MR19_9SPHN
HfaB protein {ECO:0000313|EMBL:KEZ19473.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
Putative protein involved in formation of curli polymers-like protein
SCNpilot_cont_300_bf_scaffold_679_curated_21
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19465..22542
DNA (3078bp) protein (1026aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MUU6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEZ19474.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_679_curated_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22641..23540)
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCZ5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJP73402.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_679_curated_23
unknown

Not on your lists

comp(24112..24309)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_679_curated_24
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24400..25044
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC07C
Uncharacterized protein {ECO:0000313|EMBL:AJA11771.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_679_curated_25
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25133..25675)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GVU2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB04068.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_679_curated_26
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25688..26332)
DNA (645bp) protein (215aa)
Ubiquinone biosynthesis protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I350_9SPHN
Ubiquinone biosynthesis protein {ECO:0000313|EMBL:EQB04069.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase
SCNpilot_cont_300_bf_scaffold_679_curated_27
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26329..26964)
DNA (636bp) protein (212aa)
Cation transporter n=1 Tax=Sphingobium baderi LL03 RepID=T0HXJ2_9SPHN
Cation transporter {ECO:0000313|EMBL:EQB04070.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
cation efflux protein
SCNpilot_cont_300_bf_scaffold_679_curated_28
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27026..27424)
DNA (399bp) protein (133aa)
MerR family transcriptional regulator n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A0BF4C
MerR family transcriptional regulator {ECO:0000313|EMBL:AJR26709.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
MerR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_679_curated_29
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27645..28484
DNA (840bp) protein (280aa)
Outer membrane efflux protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6INV8_9SPHN
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
Outer membrane efflux protein {ECO:0000313|EMBL:CCA93110.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Displaying 29 items

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