ggKbase home page

SCNpilot_cont_300_bf_scaffold_313_curated

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_313_curated_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1389
DNA (1389bp) protein (463aa)
hypothetical protein, partial n=1 Tax=Sphingomonas elodea RepID=UPI0002631069
Putative permease {ECO:0000313|EMBL:EJL72177.1}; Flags: Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_313_curated_2
unknown

Not on your lists

1389..2090
DNA (702bp) protein (234aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_313_curated_3
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2380..4026
DNA (1647bp) protein (549aa)
hypothetical protein, partial n=1 Tax=Sphingomonas elodea RepID=UPI0002631069
YD repeat-containing protein {ECO:0000313|EMBL:EPY12854.1}; TaxID=1117109 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus alvei A6-6i-x.;"
rhsI; Rhs core protein with extension
SCNpilot_cont_300_bf_scaffold_313_curated_4
unknown

Not on your lists

4634..5101
DNA (468bp) protein (156aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_313_curated_5
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5513..6775
DNA (1263bp) protein (421aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEB9
Putative integrase {ECO:0000313|EMBL:EIM67056.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
putative integrase
SCNpilot_cont_300_bf_scaffold_313_curated_6
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6817..7410
DNA (594bp) protein (198aa)
Protein tyrosine phosphatase-like protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T7J0_CAUSK
protein tyrosine phosphatase-like protein
Protein tyrosine phosphatase-like protein {ECO:0000313|EMBL:ABZ69728.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_313_curated_7
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7449..7649)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003748E71
DNA binding domain, excisionase family {ECO:0000313|EMBL:KEQ53251.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_313_curated_8
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7646..7858)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH63_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO37858.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_313_curated_9
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7860..9083)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036B162B
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_313_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9080..10024)
DNA (945bp) protein (315aa)
Conjugal transfer protein TrbG n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA3_9SPHN
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG {ECO:0000313|EMBL:BAK67273.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_313_curated_11
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10021..10827)
DNA (807bp) protein (269aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA4_9SPHN
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_313_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10827..12131)
DNA (1305bp) protein (435aa)
Conjugal transfer protein TrbL n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA5_9SPHN
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:BAK67275.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_313_curated_13
Sphingomonas sp. BHC-A, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12245..12985)
DNA (741bp) protein (247aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingobium indicum B90A RepID=I5BBU7_9SPHN
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KEZ00176.1}; TaxID=322611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. BHC-A.;"
conjugal transfer protein TrbJ
SCNpilot_cont_300_bf_scaffold_313_curated_14
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12991..15429)
DNA (2439bp) protein (813aa)
conjugal transfer protein TrbE n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D4A75
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_313_curated_15
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15423..15695)
DNA (273bp) protein (91aa)
conjugal transfer protein TrbD n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003703556
Putative conjugal transfer trbd transmembrane protein {ECO:0000313|EMBL:EZP83120.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
Conjugal transfer protein; K03198 type IV secretion system protein VirB3
SCNpilot_cont_300_bf_scaffold_313_curated_16
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15692..16018)
DNA (327bp) protein (109aa)
UPI0003CF20CD related cluster n=1 Tax=unknown RepID=UPI0003CF20CD
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ESY89567.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_cont_300_bf_scaffold_313_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16021..17007)
DNA (987bp) protein (329aa)
conjugal transfer protein TrbB n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEC6
Conjugal transfer protein TrbB {ECO:0000313|EMBL:ENY82800.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_300_bf_scaffold_313_curated_18
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17004..17405)
DNA (402bp) protein (134aa)
CopG family transcriptional regulator n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000361792D
Scaffold3, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32925.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
Helix-turn-helix protein, CopG
SCNpilot_cont_300_bf_scaffold_313_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17407..19431)
DNA (2025bp) protein (675aa)
Conjugal transfer coupling protein TraG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5H9_9SPHN
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:ENY82802.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_300_bf_scaffold_313_curated_20
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(19958..20968)
DNA (1011bp) protein (337aa)
Ricin B lectin n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UZ82_TERSS
ricin B lectin
Ricin B lectin {ECO:0000313|EMBL:ADV82100.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
SCNpilot_cont_300_bf_scaffold_313_curated_21
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21006..22502)
DNA (1497bp) protein (499aa)
Glycosyl hydrolases family 28 n=1 Tax=Caulobacter sp. AP07 RepID=J2QCU6_9CAUL
Glycosyl hydrolases family 28 {ECO:0000313|EMBL:EJL37952.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
endo-polygalacturonase
SCNpilot_cont_300_bf_scaffold_313_curated_22
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22572..25475)
DNA (2904bp) protein (968aa)
TonB-dependent receptor n=1 Tax=Caulobacter sp. AP07 RepID=J2HQ29_9CAUL
TonB-dependent receptor {ECO:0000313|EMBL:EJL37953.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_313_curated_23
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25636..26556)
DNA (921bp) protein (307aa)
ROK family protein; K00847 fructokinase [EC:2.7.1.4]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I377_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB19767.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_cont_300_bf_scaffold_313_curated_24
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26684..28432
DNA (1749bp) protein (583aa)
Beta-xylosidase n=1 Tax=Caulobacter sp. AP07 RepID=J3A514_9CAUL
Beta-xylosidase {ECO:0000313|EMBL:EJL26114.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
glycoside hydrolase
SCNpilot_cont_300_bf_scaffold_313_curated_25
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28439..29527)
DNA (1089bp) protein (363aa)
Transcriptional regulator, LacI family n=1 Tax=Cellvibrio sp. BR RepID=I3I4I7_9GAMM
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EIK42972.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio sp. BR.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_313_curated_26
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29782..31083
DNA (1302bp) protein (434aa)
Oligosaccharide:H+ symporter n=1 Tax=Caulobacter sp. AP07 RepID=J3A509_9CAUL
Oligosaccharide:H+ symporter {ECO:0000313|EMBL:EJL26109.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
Lactose permease Lac Y; K02532 MFS transporter, OHS family, lactose permease
SCNpilot_cont_300_bf_scaffold_313_curated_27
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31091..32275
DNA (1185bp) protein (395aa)
Glycosyl Hydrolase Family 88 n=1 Tax=Caulobacter sp. AP07 RepID=J2G8P0_9CAUL
Glycosyl Hydrolase Family 88 {ECO:0000313|EMBL:EJL26110.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
glycosyl hydrolase family protein
SCNpilot_cont_300_bf_scaffold_313_curated_28
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32272..34194
DNA (1923bp) protein (641aa)
glycoside hydrolase 97; K01187 alpha-glucosidase [EC:3.2.1.20]
Glycoside hydrolase 97 n=1 Tax=Caulobacter sp. AP07 RepID=J2H533_9CAUL
Glycoside hydrolase 97 {ECO:0000313|EMBL:EJL37955.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_313_curated_29
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34269..36221
DNA (1953bp) protein (651aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Caulobacter sp. AP07 RepID=J3AV23_9CAUL
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:EJL37959.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
beta-lactamase
SCNpilot_cont_300_bf_scaffold_313_curated_30
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36304..36966)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J3AU54_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL37956.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
Displaying items 1-30 of 71 in total

View Taxonomy