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SCNpilot_cont_300_bf_scaffold_230_curated

Search features with annotation key words

Displaying items 1-30 of 152 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_230_curated_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106..576)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E95CED
Uncharacterized protein {ECO:0000313|EMBL:AJP72462.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_230_curated_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(592..849)
DNA (258bp) protein (86aa)
glutaredoxin n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D462B2
Glutaredoxin {ECO:0000313|EMBL:AJP72464.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glutaredoxin 3; K03676 glutaredoxin 3
SCNpilot_cont_300_bf_scaffold_230_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(884..1630)
DNA (747bp) protein (249aa)
amidophosphoribosyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002632136
Amidophosphoribosyltransferase {ECO:0000313|EMBL:AJP72465.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative amidophosphoribosyltransferase
SCNpilot_cont_300_bf_scaffold_230_curated_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1673..2518
DNA (846bp) protein (282aa)
methyltransferase type 11 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030FC192
Methyltransferase type 11 {ECO:0000313|EMBL:AJP72466.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
type 11 methyltransferase
SCNpilot_cont_300_bf_scaffold_230_curated_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2745..4268
DNA (1524bp) protein (508aa)
Oxygenase (Tetracycline 6-hydroxylase) protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J8T4_AGRRK
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KJC60636.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
oxygenase (tetracycline 6-hydroxylase) protein
SCNpilot_cont_300_bf_scaffold_230_curated_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4265..4699)
DNA (435bp) protein (145aa)
mutT; CTP pyrophosphohydrolase (EC:3.6.1.-); K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037DE8A2
NTP pyrophosphohydrolase {ECO:0000313|EMBL:AJP74488.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_230_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4761..4949
DNA (189bp) protein (63aa)
pilus assembly protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CAB46
Pilus assembly protein {ECO:0000313|EMBL:AJP72467.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_230_curated_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5081..5248
DNA (168bp) protein (56aa)
pilus assembly protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CACA3
Pilus assembly protein {ECO:0000313|EMBL:AJP72468.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Flp/Fap pilin component; K02651 pilus assembly protein Flp/PilA
SCNpilot_cont_300_bf_scaffold_230_curated_9
unknown

Not on your lists

5663..5815
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_230_curated_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5818..6765)
DNA (948bp) protein (316aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomon
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
acetyl-CoA carboxylase subunit alpha n=1 Tax=Sphingomonas elodea RepID=UPI000263213D
SCNpilot_cont_300_bf_scaffold_230_curated_11
unknown

Not on your lists

comp(6838..6963)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_230_curated_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6963..7871)
DNA (909bp) protein (303aa)
tyrosine recombinase XerD n=1 Tax=Sphingomonas elodea RepID=UPI000263213E
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phage integrase family protein
SCNpilot_cont_300_bf_scaffold_230_curated_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7868..9685)
DNA (1818bp) protein (606aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000311B5B1
Uncharacterized protein {ECO:0000313|EMBL:AJP74489.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_230_curated_14
unknown

Not on your lists

comp(9666..9803)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_230_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9879..10418
DNA (540bp) protein (180aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:AJP72471.1}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
shikimate kinase n=1 Tax=Sphingomonas elodea RepID=UPI0002632141
shikimate kinase
SCNpilot_cont_300_bf_scaffold_230_curated_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10415..11503
DNA (1089bp) protein (363aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
aroB; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB156
SCNpilot_cont_300_bf_scaffold_230_curated_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11507..13441)
DNA (1935bp) protein (645aa)
TonB-dependent receptor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R7X1_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:AJP70772.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_230_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13575..14423
DNA (849bp) protein (283aa)
Response regulator receiver protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y269_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AJP70773.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LytTR family two component transcriptional regulator
SCNpilot_cont_300_bf_scaffold_230_curated_19
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14527..16542
DNA (2016bp) protein (672aa)
histidine kinase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000373E466
Histidine kinase {ECO:0000313|EMBL:KFD27456.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_230_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16613..18487
DNA (1875bp) protein (625aa)
aminopeptidase (EC:3.4.11.2)
peptidase M1 n=1 Tax=Sphingomonas elodea RepID=UPI0002632144
Aminopeptidase {ECO:0000313|EMBL:AJP72477.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_230_curated_21
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18640..19227)
DNA (588bp) protein (196aa)
Ribosomal protein L11 methyltransferase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H0C5_CAUCN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK24555.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_300_bf_scaffold_230_curated_22
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19274..19915)
DNA (642bp) protein (214aa)
Protein TonB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRQ2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE57304.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
tonB; protein TonB; K03832 periplasmic protein TonB
SCNpilot_cont_300_bf_scaffold_230_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19915..20250)
DNA (336bp) protein (112aa)
membrane protein n=1 Tax=Sphingomonas RepID=UPI000288D6FA
Membrane protein {ECO:0000313|EMBL:AIT05328.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_230_curated_24
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20247..20519)
DNA (273bp) protein (91aa)
diacylglycerol kinase; K00901 diacylglycerol kinase [EC:2.7.1.107]
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000365DC44
Diacylglycerol kinase {ECO:0000313|EMBL:GAO35505.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
SCNpilot_cont_300_bf_scaffold_230_curated_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20620..22404)
DNA (1785bp) protein (595aa)
sodium/hydrogen exchanger n=1 Tax=Sphingomonas elodea RepID=UPI0002632148
Sodium:proton exchanger {ECO:0000313|EMBL:AJP72479.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family
SCNpilot_cont_300_bf_scaffold_230_curated_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22404..22829)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D76C0F
Nitrogen-fixing protein NifU {ECO:0000313|EMBL:AJP72480.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
NifU-like protein
SCNpilot_cont_300_bf_scaffold_230_curated_27
unknown

Not on your lists

comp(22895..23371)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_230_curated_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23368..23928)
DNA (561bp) protein (187aa)
colicin V production protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB15C
Colicin V production protein {ECO:0000313|EMBL:AJP72482.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
colicin V production protein; K03558 membrane protein required for colicin V production
SCNpilot_cont_300_bf_scaffold_230_curated_29
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23992..24555)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003783A12
Putative outer membrane lipoprotein Blc {ECO:0000313|EMBL:EIM96526.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
Lipocalin family protein; K03098 outer membrane lipoprotein Blc
SCNpilot_cont_300_bf_scaffold_230_curated_30
unknown

Not on your lists

comp(24597..25148)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCF7A
Displaying items 1-30 of 152 in total

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