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SCNpilot_cont_300_bf_scaffold_1741_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1741_curated_1
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

250..816
DNA (567bp) protein (189aa)
conjugal transfer protein TraE n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035FB5A8
TraE family protein {ECO:0000313|EMBL:KEZ13737.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
TraE family protein
SCNpilot_cont_300_bf_scaffold_1741_curated_2
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

813..1616
DNA (804bp) protein (268aa)
conjugal transfer protein TraK n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000370D847
Uncharacterized protein {ECO:0000313|EMBL:KEZ13738.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1741_curated_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1620..2945
DNA (1326bp) protein (442aa)
conjugal transfer protein TraB n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000381FB82
Conjugal transfer protein TraB {ECO:0000313|EMBL:KEZ13739.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
TraB pilus assembly family protein
SCNpilot_cont_300_bf_scaffold_1741_curated_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2932..3834
DNA (903bp) protein (301aa)
hypothetical protein; K03981 thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036C9CE9
Disulfide isomerase protein {ECO:0000313|EMBL:KEZ13740.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_300_bf_scaffold_1741_curated_5
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3831..4766
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036C7239
Type IV conjugative transfer system lipo family protein {ECO:0000313|EMBL:KEZ13741.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
Type IV conjugative transfer system protein TraV; K12064 conjugal transfer pilus assembly protein TraV
SCNpilot_cont_300_bf_scaffold_1741_curated_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4766..7357
DNA (2592bp) protein (864aa)
(4Fe-4S)-binding protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003798A23
Type-IV secretion system protein TraC {ECO:0000313|EMBL:KEZ13742.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
Type-IV secretion system protein TraC
SCNpilot_cont_300_bf_scaffold_1741_curated_7
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7362..7700
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035FB50E
Uncharacterized protein {ECO:0000313|EMBL:KEZ13743.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1741_curated_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7693..8346
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035E6365
Uncharacterized protein {ECO:0000313|EMBL:KEZ13744.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1741_curated_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8330..8863
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003607756
Conjugative signal peptidase TrhF {ECO:0000313|EMBL:KEZ13745.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
type IV secretory pathway protease TraF-like protein; K12062 conjugal transfer pilin signal peptidase TrbI
SCNpilot_cont_300_bf_scaffold_1741_curated_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8860..9516
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000361301C
Type-F conjugative transfer system protein TraW {ECO:0000313|EMBL:KEZ13746.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
Type-F conjugative transfer system protein TraW; K12061 conjugal transfer pilus assembly protein TraW
SCNpilot_cont_300_bf_scaffold_1741_curated_11
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9516..9788
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003646DAF
Uncharacterized protein {ECO:0000313|EMBL:KEZ13747.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1741_curated_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9785..10810
DNA (1026bp) protein (342aa)
conjugal transfer protein TraU n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003741EC7
TraU family protein {ECO:0000313|EMBL:KEZ13748.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
TraU family protein; K12060 conjugal transfer pilus assembly protein TraU
SCNpilot_cont_300_bf_scaffold_1741_curated_13
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11794..12414
DNA (621bp) protein (207aa)
RNA-directed DNA polymerase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EKS8_9SPHN
RNA-directed DNA polymerase (Reverse transcriptase)
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
Displaying 13 items

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