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SCNpilot_cont_300_bf_scaffold_370_curated

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_370_curated_1
unknown

Not on your lists

comp(3..89)
DNA (87bp) protein (29aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_370_curated_2
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120..731)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035E4B05
Cytochrome C {ECO:0000313|EMBL:KHA65726.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
cytochrome c family protein
SCNpilot_cont_300_bf_scaffold_370_curated_3
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(754..1998)
DNA (1245bp) protein (415aa)
copper resistance protein CopB n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B57DD0
Copper resistance protein CopB {ECO:0000313|EMBL:KFL46262.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
copper resistance protein CopB; K07233 copper resistance protein B
SCNpilot_cont_300_bf_scaffold_370_curated_4
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1995..3917)
DNA (1923bp) protein (641aa)
copper-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6380F
Copper-binding protein {ECO:0000313|EMBL:ETI65494.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
copper resistance protein CopA
SCNpilot_cont_300_bf_scaffold_370_curated_5
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4280..4918
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9BE3
Uncharacterized protein {ECO:0000313|EMBL:KFL46202.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
membrane protein
SCNpilot_cont_300_bf_scaffold_370_curated_6
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(5006..5581)
DNA (576bp) protein (192aa)
FecI sigma-24 factor n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D8420C
FecI sigma-24 factor {ECO:0000313|EMBL:KIJ72444.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
rpoE; ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_370_curated_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5578..6018)
DNA (441bp) protein (147aa)
heavy metal resistance protein n=1 Tax=Sphingomonas melonis RepID=UPI00036BBA9B
DNA, contig: SP670 {ECO:0000313|EMBL:GAN15875.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_370_curated_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6015..6284)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B695C5
Sphingomonas taxi strain 30a NODE_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26879.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_370_curated_9
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6424..7404)
DNA (981bp) protein (327aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Pyridine nucleotide-disulfide oxidoreductase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X363_9SPHN
Thioredoxin reductase {ECO:0000313|EMBL:EXS70668.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
SCNpilot_cont_300_bf_scaffold_370_curated_10
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7618..7986
DNA (369bp) protein (123aa)
Copper resistance CopC family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X362_9SPHN
Copper resistance protein CopC {ECO:0000313|EMBL:KFL47211.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
copD; copper resistance protein D transmembrane component CopD; K07156
SCNpilot_cont_300_bf_scaffold_370_curated_11
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7991..8917
DNA (927bp) protein (309aa)
Copper resistance D family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X361_9SPHN
Copper resistance protein CopD {ECO:0000313|EMBL:KFL47210.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
copper resistance D; K07245 putative copper resistance protein D
SCNpilot_cont_300_bf_scaffold_370_curated_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8959..9195
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003608B72
DNA, contig: SP670 {ECO:0000313|EMBL:GAN15871.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
flagellar biosynthetic protein FliQ; K02420 flagellar biosynthetic protein FliQ
SCNpilot_cont_300_bf_scaffold_370_curated_13
Exiguobacterium sp. S17, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9462..10607
DNA (1146bp) protein (382aa)
Acyltransferase family protein n=2 Tax=Bacteria RepID=S3GDE3_9BACL
Acyltransferase family protein {ECO:0000313|EMBL:EPE60618.1}; TaxID=856854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium sp. S17.;"
putative acyltransferase
SCNpilot_cont_300_bf_scaffold_370_curated_14
unknown

Not on your lists

10604..11317
DNA (714bp) protein (238aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_370_curated_15
unknown

Not on your lists

comp(11860..12126)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_370_curated_16
unknown

Not on your lists

12364..12567
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_370_curated_17
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12756..14117)
DNA (1362bp) protein (454aa)
Amino acid/polyamine/organocation transporter, APC superfamily n=2 Tax=Congregibacter RepID=A4A478_9GAMM
Amino acid permease {ECO:0000313|EMBL:EXS70679.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
amino acid permease-associated protein
SCNpilot_cont_300_bf_scaffold_370_curated_18
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(14114..15103)
DNA (990bp) protein (330aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01733 threonine synthase [EC:4.2.3.1]
Threonine synthase n=1 Tax=Acetonema longum DSM 6540 RepID=F7NM35_9FIRM
Threonine synthase {ECO:0000313|EMBL:EGO62890.1}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 6540.;"
SCNpilot_cont_300_bf_scaffold_370_curated_19
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15368..16594)
DNA (1227bp) protein (409aa)
cystathionine beta-lyase; K01760 cystathionine beta-lyase [EC:4.4.1.8]
Cystathionine beta-lyase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQF1_SPHAL
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_370_curated_20
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16827..17741
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=2 Tax=Sphingopyxis RepID=Q1GQE8_SPHAL
LysR family transcriptional regulator
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_370_curated_21
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17738..20083)
DNA (2346bp) protein (782aa)
TonB-dependent receptor, plug n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URA7_9SPHN
TonB-dependent receptor, plug; K02014 iron complex outermembrane recepter protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_370_curated_22
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20381..21760
DNA (1380bp) protein (460aa)
glycosidase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDB90
Glycosidase {ECO:0000313|EMBL:AKH18858.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
glycosidase PH1107-like protein
SCNpilot_cont_300_bf_scaffold_370_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22912..24219)
DNA (1308bp) protein (436aa)
type II restriction enzyme NmeDIP n=1 Tax=Sphingomonas melonis RepID=UPI000367A04F
Sphingomonas taxi strain 30a NODE_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26885.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_370_curated_24
unknown

Not on your lists

comp(24280..24465)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_370_curated_25
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25064..25423
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002E51C0B
Antitoxin ParD1 {ECO:0000313|EMBL:EZP55159.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_370_curated_26
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26066..26464)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6N9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48821.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_cont_300_bf_scaffold_370_curated_27
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26461..27147)
DNA (687bp) protein (229aa)
transporter n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002882DF9
Transporter {ECO:0000313|EMBL:KHA65693.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein; K07238 zinc transporter, ZIP family
SCNpilot_cont_300_bf_scaffold_370_curated_28
Exiguobacterium sp. S17, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27894..28400)
DNA (507bp) protein (169aa)
ROS/MUCR transcriptional regulator family protein n=1 Tax=Exiguobacterium sp. S17 RepID=S3FIF2_9BACL
ROS/MUCR transcriptional regulator family protein {ECO:0000313|EMBL:EPE62010.1}; TaxID=856854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium sp. S17.;"
MucR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_370_curated_29
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29228..29641)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B733C3
Uncharacterized protein {ECO:0000313|EMBL:KEO86834.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_370_curated_30
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30443..31729
DNA (1287bp) protein (429aa)
UPI0003D5FCC3 related cluster n=1 Tax=unknown RepID=UPI0003D5FCC3
Transporter {ECO:0000313|EMBL:ETI58569.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
Displaying items 1-30 of 61 in total

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