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SCNpilot_cont_300_bf_scaffold_236_curated

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Displaying items 1-30 of 138 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_236_curated_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..2913)
DNA (2913bp) protein (971aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:AJP72130.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4C6E1
SCNpilot_cont_300_bf_scaffold_236_curated_2
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3191..5119
DNA (1929bp) protein (643aa)
glutaryl-7-ACA acylase n=1 Tax=Sphingomonas melonis RepID=UPI00036A7B48
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:EZP55005.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
dipeptidyl-peptidase; K06978
SCNpilot_cont_300_bf_scaffold_236_curated_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5177..6370
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD619
Uncharacterized protein {ECO:0000313|EMBL:EZP57295.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_236_curated_4
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6620..7000)
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H191_9SPHN
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_cont_300_bf_scaffold_236_curated_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7068..7583)
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=1 Tax=Sphingomonas melonis RepID=UPI00036DD128
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rplJ; ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_cont_300_bf_scaffold_236_curated_6
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7878..9047)
DNA (1170bp) protein (390aa)
lactate 2-monooxygenase (EC:1.13.12.4)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000378E16D
Putative lactate 2-monooxygenase {ECO:0000313|EMBL:GAO38892.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_cont_300_bf_scaffold_236_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9111..11180)
DNA (2070bp) protein (690aa)
TonB-dependent Receptor Plug domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYF0_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:AIT06707.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_236_curated_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11345..12037)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4A755
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
SCNpilot_cont_300_bf_scaffold_236_curated_9
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12040..12471)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5ABD8
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
SCNpilot_cont_300_bf_scaffold_236_curated_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12622..13605)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4FDEA
Uncharacterized protein {ECO:0000313|EMBL:EZP52986.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_236_curated_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13679..14992)
DNA (1314bp) protein (438aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036508E5
signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_236_curated_12
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15043..15780)
DNA (738bp) protein (246aa)
chemotaxis protein CheY n=2 Tax=Sphingomonas RepID=UPI000287B5AA
Putative two-component response regulator {ECO:0000313|EMBL:GAL99664.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
CheY-like response regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_cont_300_bf_scaffold_236_curated_13
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15849..16463)
DNA (615bp) protein (205aa)
UPI0003CFB178 related cluster n=1 Tax=unknown RepID=UPI0003CFB178
Uncharacterized protein {ECO:0000313|EMBL:ESZ86076.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_236_curated_14
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16582..17367)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000367DF1E
Uncharacterized protein {ECO:0000313|EMBL:KHA65651.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_236_curated_15
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17364..18896)
DNA (1533bp) protein (511aa)
lcfB2; long-chain-fatty-acid--CoA ligase LcfB (EC:6.2.1.3)
4-coumarate--CoA ligase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD1CB
4-coumarate--CoA ligase {ECO:0000313|EMBL:KHA65650.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_300_bf_scaffold_236_curated_16
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18968..19759
DNA (792bp) protein (264aa)
3-oxoacyl-acyl-carrier protein reductase {ECO:0000313|EMBL:ERJ20081.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ERJ20081.1};; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera shabanensis E1L3A.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003790142
SDR-family protein
SCNpilot_cont_300_bf_scaffold_236_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20063..20755)
DNA (693bp) protein (231aa)
LrgB family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2III2_9SPHN
LrgB family protein
LrgB family protein {ECO:0000313|EMBL:BAK67105.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_236_curated_18
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20752..21114)
DNA (363bp) protein (121aa)
LrgA family protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VQ14_9SPHN
LrgA family protein {ECO:0000313|EMBL:EZP82183.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
LrgA family protein
SCNpilot_cont_300_bf_scaffold_236_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21194..21892)
DNA (699bp) protein (233aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002893B6A
Uncharacterized protein {ECO:0000313|EMBL:EKS36852.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_300_bf_scaffold_236_curated_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21941..23176)
DNA (1236bp) protein (412aa)
MFS transporter n=1 Tax=Sphingomonas elodea RepID=UPI0002630ACA
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29167.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
major facilitator transporter; K08151 MFS transporter, DHA1 family, tetracycline resistance protein
SCNpilot_cont_300_bf_scaffold_236_curated_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23306..24526
DNA (1221bp) protein (407aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000376FCDB
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29166.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_236_curated_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24623..25687
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000375994D
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29144.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_236_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25733..26977)
DNA (1245bp) protein (415aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas melonis RepID=UPI00036684C3
TetR family transcriptional regulator {ECO:0000313|EMBL:AIT05906.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_236_curated_24
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27132..28439
DNA (1308bp) protein (436aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036B43C9
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KHA65648.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_236_curated_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28509..29597
DNA (1089bp) protein (363aa)
zinc-binding alcohol dehydrogenase; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036118E0
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29142.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_236_curated_26
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29594..30652
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000365B67E
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:KHA65653.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
aminoglycoside phosphotransferase; K06979
SCNpilot_cont_300_bf_scaffold_236_curated_27
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30669..31433
DNA (765bp) protein (255aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381E72D
Short-chain dehydrogenase {ECO:0000313|EMBL:KHA65652.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_236_curated_28
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31448..32248
DNA (801bp) protein (267aa)
oxidoreductase n=1 Tax=Sphingomonas melonis RepID=UPI000381460B
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29139.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_236_curated_29
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32291..32524)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WGD2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ79268.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_cont_300_bf_scaffold_236_curated_30
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32961..34802)
DNA (1842bp) protein (614aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GM54_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL31280.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein
Displaying items 1-30 of 138 in total

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